Browse Element(s) Details


Os.10635.1.S1_s_at

Description gb:AK072315.1
DB_XREF= gi:32982338
TID=Os.10635.1
CNT=68
FEA=FLmRNA
TIER=FL+Stack
STK=28
UG=Os.10635 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021M07, full insert sequence.
FL= gb:AK072315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5188011/11GHMP kinases putative ATP-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51840NANA4+30524485..30527574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g51850NANA4+30529061..30530852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g51860NANA4+30531682..30533075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g51870OsAffx.8923.1.S1_at8/114+30537661..30538692retrotransposon protein, putative, unclassified
LOC_Os04g51880Os.10635.1.S1_s_at11/114+30545402..30551639GHMP kinases putative ATP-binding protein, expressed
LOC_Os04g51890Os.57349.1.S1_at11/114+30564553..30565447Auxin responsive protein, expressed
LOC_Os04g51900Os.50553.1.S1_at11/114+30571994..30579093nuclear pore complex protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004335molecular_functiongalactokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10635.1.S1_s_at--348--1311Chr04:30546023..30546047 (25 bp)
AGATGATCCAGCTGTACGAGATCCT
LOC_Os04g51880
Os.10635.1.S1_s_at--633--3891Chr04:30545859..30545883 (25 bp)
CTGGTGAGCAAGATCCCGCCGGGCC
LOC_Os04g51880
Os.10635.1.S1_s_at--354--4491Chr04:30545757..30545781 (25 bp)
GCCGGAGCAGCCTCGCATTGCCGTG
LOC_Os04g51880
Os.10635.1.S1_s_at--310--3951Chr04:30545641..30545665 (25 bp)
CGGTTTACGCGTACGGAGCTTGGCT
LOC_Os04g51880
Os.10635.1.S1_s_at--535--1931Chr04:30545629..30545653 (25 bp)
ACGGAGCTTGGCTAGTTCCAGTTGA
LOC_Os04g51880
Os.10635.1.S1_s_at--685--8491Chr04:30545621..30545645 (25 bp)
TGGCTAGTTCCAGTTGAGACTTGAG
LOC_Os04g51880
Os.10635.1.S1_s_at--649--271Chr04:30545575..30545599 (25 bp)
ATAGGTACGAACTGTCCGTGTGTAT
LOC_Os04g51880
Os.10635.1.S1_s_at--870--7451Chr04:30545558..30545582 (25 bp)
GTGTGTATACGGGTACAGACTACAG
LOC_Os04g51880
Os.10635.1.S1_s_at--1009--3411Chr04:30545543..30545567 (25 bp)
CAGACTACAGAGTGCCAGCTTTTGT
LOC_Os04g51880
Os.10635.1.S1_s_at--1076--1331Chr04:30545535..30545559 (25 bp)
AGAGTGCCAGCTTTTGTCCGTGTAT
LOC_Os04g51880
Os.10635.1.S1_s_at--848--7251Chr04:30545520..30545544 (25 bp)
GTCCGTGTATGTGTAGAACCAATTG
LOC_Os04g51880
Target Sequence 
AGATGATCCAGCTGTACGAGATCCTCCTCAAGGCACCCGGCGTCCTCGGCGCGCGGTTCAGCGGCGCCGGCTTCAGAGGC
TGCTGCCTCGCCGTCGTGGAGAGCGGCCACGCGGAGGCGGCGGCGGCGTTCGTCCGGGCCGAGTACGAGAAGGCGCAGCC
GGAGCTGGTGAGCAAGATCCCGCCGGGCCGCCGCGTGCTGGTCTGCGAGCCCGGTGACGGCGCCCGCGTCATATAGCTCA
CCGCCCACCGCCGTTCTGCCGGTCTCGCCGGAGCAGCCTCGCATTGCCGTGCCCGGCGCGCCGCGAAGGCGGTGGCGTCG
TGGCGACGCCGGCGTGCAAGGATGGACGGTGGTCGCTTGGGCCTCGGCGCGGCGAGCTCCCCCGGTTTACGCGTACGGAG
CTTGGCTAGTTCCAGTTGAGACTTGAGAGTGGGTGTAATGGTAATGGTATAGGTACGAACTGTCCGTGTGTATACGGGTA
CAGACTACAGAGTGCCAGCTTTTGTCCGTGTATGTGTAGAACCAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10635.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis