Browse Element(s) Details


Os.57349.1.S1_at

Description gb:AK111353.1
DB_XREF= gi:32996562
TID=Os.57349.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G09, full insert sequence.
FL= gb:AK111353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5189011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51880Os.10635.1.S1_s_at11/114+30545402..30551639GHMP kinases putative ATP-binding protein, expressed
LOC_Os04g51890Os.57349.1.S1_at11/114+30564553..30565447Auxin responsive protein, expressed
LOC_Os04g51900Os.50553.1.S1_at11/114+30571994..30579093nuclear pore complex protein, putative, expressed
LOC_Os04g51910Os.15719.1.S1_at11/114+30579644..30583982Proteasome/cyclosome repeat family protein, expressed
LOC_Os04g51920Os.49079.1.A1_at11/114+30586583..30589385PDI, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57349.1.S1_at--738--8111Chr04:30564948..30564972 (25 bp)
GGACTACCTGAAGCACCGGGCGTTC
LOC_Os04g51890
Os.57349.1.S1_at--255--4211Chr04:30565158..30565182 (25 bp)
CCCCAACAACCCATTGTGCAGATGA
LOC_Os04g51890
Os.57349.1.S1_at--1079--1311Chr04:30565183..30565207 (25 bp)
AGAGGAACGTAGTAGCTGCTGGTTT
LOC_Os04g51890
Os.57349.1.S1_at--905--4771Chr04:30565197..30565221 (25 bp)
GCTGCTGGTTTTTAGCATGGCTGTT
LOC_Os04g51890
Os.57349.1.S1_at--1055--8471Chr04:30565214..30565238 (25 bp)
TGGCTGTTGTTCATCCATCCAAAAG
LOC_Os04g51890
Os.57349.1.S1_at--176--511Chr04:30565273..30565297 (25 bp)
ATCGATTTGTGTTTTTAAGTGTTGT
LOC_Os04g51890
Os.57349.1.S1_at--1066--1051Chr04:30565306..30565330 (25 bp)
AGGGATGATTTGATAGTATCTCCCC
LOC_Os04g51890
Os.57349.1.S1_at--1021--4111Chr04:30565329..30565353 (25 bp)
CCCCTAAGCTTAGAATTACTGCGTA
LOC_Os04g51890
Os.57349.1.S1_at--240--10411Chr04:30565369..30565393 (25 bp)
TTTTGTTGAGTTGAGCTGATGATCT
LOC_Os04g51890
Os.57349.1.S1_at--845--5891Chr04:30565381..30565405 (25 bp)
GAGCTGATGATCTGAATTGGGTAAT
LOC_Os04g51890
Os.57349.1.S1_at--935--31Chr04:30565396..30565420 (25 bp)
ATTGGGTAATGCAGCCCTCATGGAT
LOC_Os04g51890
Target Sequence 
GGACTACCTGAAGCACCGGGCGTTCGCGGCGCTGCTCCGGGAGGCGGAGGAGGAGTTCGGGTTCCAGCAGGAGGGCGTGC
TCCGCATCCCCTGCGAGGTGCCCGCCTTCGAGGCCATCCTCAAGGCCGTCGAGAAGAACAAGAAGGACAACGCCGCCGCC
TTCTGCTACTGCAGCTACGAGTACGCCGCCGACGAGGTCGCCCTCGGCGCCCCCAACAACCCATTGTGCAGATGAAGAGG
AACGTAGTAGCTGCTGGTTTTTAGCATGGCTGTTGTTCATCCATCCAAAAGAAATGGATTTTTTTTCTTTTTCTTTTCTT
TTCTTATCGATTTGTGTTTTTAAGTGTTGTGGATGGTGAGGGATGATTTGATAGTATCTCCCCCCTAAGCTTAGAATTAC
TGCGTAATATTTTTTTTCTTATTTTGTTGAGTTGAGCTGATGATCTGAATTGGGTAATGCAGCCCTCATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis