Browse Element(s) Details


Os.15719.1.S1_at

Description gb:AK099648.1
DB_XREF= gi:32984857
TID=Os.15719.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15719 (NCBI UniGene Cluster)
UG_TITLE=Clone Osch22 26S proteasome regulatory subunit mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065A21, full insert sequence.
FL= gb:AK099648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5191011/11Proteasome/cyclosome repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51890Os.57349.1.S1_at11/114+30564553..30565447Auxin responsive protein, expressed
LOC_Os04g51900Os.50553.1.S1_at11/114+30571994..30579093nuclear pore complex protein, putative, expressed
LOC_Os04g51910Os.15719.1.S1_at11/114+30579644..30583982Proteasome/cyclosome repeat family protein, expressed
LOC_Os04g51920Os.49079.1.A1_at11/114+30586583..30589385PDI, putative, expressed
LOC_Os04g51930OsAffx.22535.1.S1_at10/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51930OsAffx.1528.1.S1_at5/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51940Os.18168.1.S1_at10/114+30602055..30606441YT521-B-like family protein, expressed
LOC_Os04g51950Os.47874.1.S1_at11/114+30606477..30610501serine/threonine protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15719.1.S1_at--563--10551Chr04:30580209..30580233 (25 bp)
TTCATCAAGTTTATCGAGGGCAGCC
LOC_Os04g51910
Os.15719.1.S1_at--36--1091Chr04:30580193..30580217 (25 bp)
AGGGCAGCCGATATGTCCCGGTGAA
LOC_Os04g51910
Os.15719.1.S1_at--375--8971Chr04:30580172..30580196 (25 bp)
TGAAACCTGCTCCATCTGGATTCAT
LOC_Os04g51910
Os.15719.1.S1_at--728--2211Chr04:30579997..30580021 (25 bp)
ACAACCTTTCGAGTACACCTCGTGA
LOC_Os04g51910
Os.15719.1.S1_at--69--6051Chr04:30579945..30579969 (25 bp)
GAGATCTGGACTCGCAAATCCTTTC
LOC_Os04g51910
Os.15719.1.S1_at--1000--3031Chr04:30579929..30579953 (25 bp)
AATCCTTTCTTTCCTACTGTATACG
LOC_Os04g51910
Os.15719.1.S1_at--382--3031Chr04:30579880..30579904 (25 bp)
AATGCGCGGAAATTTGTTGCTGGAA
LOC_Os04g51910
Os.15719.1.S1_at--917--531Chr04:30579755..30579779 (25 bp)
ATCGCGTCCTGTGATGCTTTGAACT
LOC_Os04g51910
Os.15719.1.S1_at--802--631Chr04:30579726..30579750 (25 bp)
ATGCTTGTATTCCATCGTTTTCCAA
LOC_Os04g51910
Os.15719.1.S1_at--504--51Chr04:30579671..30579695 (25 bp)
ATTGCATTATTCTCCAACGCTAAGG
LOC_Os04g51910
Os.15719.1.S1_at--162--2611Chr04:30579656..30579680 (25 bp)
AACGCTAAGGTGTCATGCTTGTATT
LOC_Os04g51910
Target Sequence 
TTCATCAAGTTTATCGAGGGCAGCCGATATGTCCCGGTGAAACCTGCTCCATCTGGATTCATCCTCCTCCAGGACATGCA
GCCAACCGAGGCGGAGGTACTCGCACTCACCGATGCCCCCTCAACTGTGGCTGCGACCACTGGTAGCGCCGCTGCTGCCA
CAGGCCAACAGGCCTCATCTGCCATGGCTGTCGACGACGAGCCGCAGCCACCACAACCTTTCGAGTACACCTCGTGATGG
TAGAAATGTAGGAGGCTTGTAATAGAGATCTGGACTCGCAAATCCTTTCTTTCCTACTGTATACGTTGCTTATTCTTTTT
TGAGTATGTAATGCGCGGAAATTTGTTGCTGGAAAAAAAAATAACTGATGAATCGTCCGTAGAGAACTTTGATGGAGATT
ATACGATGGGTCTTTTGAGTTGGGGTATCGACTGGCAGCGCAAGCCGCAACCTGCATCGCGTCCTGTGATGCTTTGAACT
TGCAATGCTTGTATTCCATCGTTTTCCAACGATAAGGTATCAGAACTTGAAATGCTTGTATTGCATTATTCTCCAACGCT
AAGGTGTCATGCTTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis