Browse Element(s) Details


Os.49079.1.A1_at

Description gb:AK067687.1
DB_XREF= gi:32977705
TID=Os.49079.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119B03, full insert sequence.
FL= gb:AK067687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5192011/11PDI, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51890Os.57349.1.S1_at11/114+30564553..30565447Auxin responsive protein, expressed
LOC_Os04g51900Os.50553.1.S1_at11/114+30571994..30579093nuclear pore complex protein, putative, expressed
LOC_Os04g51910Os.15719.1.S1_at11/114+30579644..30583982Proteasome/cyclosome repeat family protein, expressed
LOC_Os04g51920Os.49079.1.A1_at11/114+30586583..30589385PDI, putative, expressed
LOC_Os04g51930OsAffx.22535.1.S1_at10/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51930OsAffx.1528.1.S1_at5/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51940Os.18168.1.S1_at10/114+30602055..30606441YT521-B-like family protein, expressed
LOC_Os04g51950Os.47874.1.S1_at11/114+30606477..30610501serine/threonine protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49079.1.A1_at--863--2631Chr04:30587777..30587801 (25 bp)
AAGCCTTGAGACCTGGGAATTTCCA
LOC_Os04g51920
Os.49079.1.A1_at--316--7131Chr04:30587751..30587775 (25 bp)
GTCATATTCATTTCCATGGACCGCA
LOC_Os04g51920
Os.49079.1.A1_at--550--3031Chr04:30587695..30587719 (25 bp)
AATGCCATGGTTTGCTATCCCCTAT
LOC_Os04g51920
Os.49079.1.A1_at--224--10151Chr04:30587680..30587704 (25 bp)
TATCCCCTATTCTGACACAACTGTG
LOC_Os04g51920
Os.49079.1.A1_at--278--10131Chr04:30587632..30587656 (25 bp)
TATCAAAGGCATCCCAACACTCTTG
LOC_Os04g51920
Os.49079.1.A1_at--872--2471Chr04:30587617..30587641 (25 bp)
AACACTCTTGATACTTGGACCAGAT
LOC_Os04g51920
Os.49079.1.A1_at--691--6011Chr04:30587458..30587482 (25 bp)
GAGAGATCACCGTCATGAGCATGAG
LOC_Os04g51920
Os.49079.1.A1_at--1121--2411Chr04:30587378..30587402 (25 bp)
AAAACTGGGTCTTCTCTTGCAAGCA
LOC_Os04g51920
Os.49079.1.A1_at--2--2731Chr04:30587358..30587382 (25 bp)
AAGCAGTGCAACTTCGATCTCCATC
LOC_Os04g51920
Os.49079.1.A1_at--846--9231Chr04:30587339..30587363 (25 bp)
TCCATCCAACCTGTGCGCAAGAAAG
LOC_Os04g51920
Os.49079.1.A1_at--749--8671Chr04:30587242..30587266 (25 bp)
TGTGTCCAACAGATCTAGTGCTAAT
LOC_Os04g51920
Target Sequence 
AAGCCTTGAGACCTGGGAATTTCCAGGTCATATTCATTTCCATGGACCGCAATGAGGAAGAATTCCAAGCAAGCCTGAGT
GCAATGCCATGGTTTGCTATCCCCTATTCTGACACAACTGTGCAAGAACTCAGTAGAATCTTCACTATCAAAGGCATCCC
AACACTCTTGATACTTGGACCAGATGGTAAAGTGTTCAAAACAGACGGAAGGAGAATAATTTCAAAATATGGTGCAATGG
CATTCCCTTTTACAGAATCAAGAGCTTATGAGTTGGAAGAAGTTCTCAAAAAGGAAAGGGACAGCCTGCCTCACCGAGTG
AGAGATCACCGTCATGAGCATGAGCTTGAGTTGGACATGGCTAAGGCTTATGTATGCGATGAGTGCCAACAGAAAGGGCA
AAACTGGGTCTTCTCTTGCAAGCAGTGCAACTTCGATCTCCATCCAACCTGTGCGCAAGAAAGTACTGATGTAAACATCT
GAGATATTTATACTTCAAATATACTGACAACAATGATGTATGCGTTTATGTATATTGTGTCCAACAGATCTAGTGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49079.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis