Browse Element(s) Details


Os.47874.1.S1_at

Description gb:AK111698.1
DB_XREF= gi:37988361
TID=Os.47874.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) serinethreonine protein kinase (DPK2) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004I16, full insert sequence.
FL= gb:AK111698.1 gb:AY156511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5195011/11serine/threonine protein kinase, putative, expressed
LOC_Os01g379101/11Vacuolar processing enzyme, gamma-isozyme precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51910Os.15719.1.S1_at11/114+30579644..30583982Proteasome/cyclosome repeat family protein, expressed
LOC_Os04g51920Os.49079.1.A1_at11/114+30586583..30589385PDI, putative, expressed
LOC_Os04g51930OsAffx.22535.1.S1_at10/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51930OsAffx.1528.1.S1_at5/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51940Os.18168.1.S1_at10/114+30602055..30606441YT521-B-like family protein, expressed
LOC_Os04g51950Os.47874.1.S1_at11/114+30606477..30610501serine/threonine protein kinase, putative, expressed
LOC_Os04g51960Os.51659.1.S1_at11/114+30624132..30627267expressed protein
LOC_Os04g51960Os.27997.1.S1_at10/114+30624132..30627267expressed protein
LOC_Os04g51970Os.14574.1.S1_at11/114+30633216..30636973major facilitator superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006624biological_processvacuolar protein processing or maturation
GO:0010214biological_processseed coat development
GO:0012501biological_processprogrammed cell death
GO:0000323cellular_componentlytic vacuole
GO:0005615cellular_componentextracellular space
GO:0003923molecular_functionGPI-anchor transamidase activity
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0016301molecular_functionkinase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47874.1.S1_at--1079--10411Chr04:30606892..30606916 (25 bp)
TTATCACATGTTAGACTCTGCGCCG
LOC_Os04g51950
Os.47874.1.S1_at--637--9492Chr01:21557760..21557779 (20 bp)
TCTGCGCCGCTGAAGTAGAAATCCA
LOC_Os01g37910
Os.47874.1.S1_at--854--1971Chr04:30606767..30606791 (25 bp)
ACTGCTTTGGTGTGTTAGGCTCTAT
LOC_Os04g51950
Os.47874.1.S1_at--59--8311Chr04:30606750..30606774 (25 bp)
GGCTCTATCCTTTTGTCGAAACATC
LOC_Os04g51950
Os.47874.1.S1_at--1117--10791Chr04:30606708..30606732 (25 bp)
TTGTAACTGACGCATGTTCCTGCTG
LOC_Os04g51950
Os.47874.1.S1_at--204--9031Chr04:30606646..30606670 (25 bp)
TGCACAAACTTTGCTGCGTTCAGAG
LOC_Os04g51950
Os.47874.1.S1_at--1133--2271Chr04:30606599..30606624 (25 bp)
AAATGTTCCCGTGGCAGAGTTCTGC
LOC_Os04g51950
Os.47874.1.S1_at--358--9491Chr04:30606579..30606603 (25 bp)
TCTGCTAATGCCAAGCTTTCGGTTA
LOC_Os04g51950
Os.47874.1.S1_at--680--10511Chr04:30606551..30606575 (25 bp)
TTCCTTACCCGTTTCCTAGATTCAG
LOC_Os04g51950
Os.47874.1.S1_at--697--10031Chr04:30606535..30606559 (25 bp)
TAGATTCAGCTCCTAGTTACTGGCT
LOC_Os04g51950
Os.47874.1.S1_at--1095--3851Chr04:30606512..30606536 (25 bp)
CTGAGTTTGTAGTGCCTGCCATTGA
LOC_Os04g51950
Target Sequence 
TTATCACATGTTAGACTCTGCGCCGCTGAAGTAGAAATCCAACTTGAGTGTACGACTGAGTTATANACNCAGGTGTAAGG
CAGTTCTATANNCAAAATATTTCTCTNTTAGAGTGGTGTTTTCAGACTGCTTTGGTGTGTTAGGCTCTATCCTTTTGTCG
AAACATCATGCAGATTTCCTTTTGTTGTAACTGACGCATGTTCCTGCTGCTTTATGCNTGTGTTATATAATCCCCCTGCT
GGAACATGCACAAACTTTGCTGCGTTCAGAGTATATAGTATGTACAATTTGAAATGTTCCCGTGGCAGAGTTCTGCTAAT
GCCAAGCTTTCGGTTAATCTTCCTTACCCGTTTCCTAGATTCAGCTCCTAGTTACTGGCTGAGTTTGTAGTGCCTGCCAT
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis