Browse Element(s) Details


Os.27997.1.S1_at

Description gb:BI306722
DB_XREF= gi:14982044
DB_XREF=NL_5_O03
CLONE=NL_5_O03
TID=Os.27997.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.27997 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T46237 (A.thaliana) T46237 hypothetical protein T9C5.190 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5196010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51940Os.18168.1.S1_at10/114+30602055..30606441YT521-B-like family protein, expressed
LOC_Os04g51950Os.47874.1.S1_at11/114+30606477..30610501serine/threonine protein kinase, putative, expressed
LOC_Os04g51960Os.51659.1.S1_at11/114+30624132..30627267expressed protein
LOC_Os04g51960Os.27997.1.S1_at10/114+30624132..30627267expressed protein
LOC_Os04g51970Os.14574.1.S1_at11/114+30633216..30636973major facilitator superfamily protein, expressed
LOC_Os04g51980NANA4+30641585..30644054Transferase family protein
LOC_Os04g51990NANA4+30650588..30652665Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27997.1.S1_at--390--3971NONE
CGGGCAAAGGTTTTTCAGACACACA
NONE
Os.27997.1.S1_at--412--10351Chr04:30624744..30624768 (25 bp)
TTTTCAGACACACAAAGCCACCACG
LOC_Os04g51960
Os.27997.1.S1_at--1157--5791Chr04:30624797..30624821 (25 bp)
GACGCTGAGGGCTGCTCTTGGTTTG
LOC_Os04g51960
Os.27997.1.S1_at--653--1451Chr04:30624841..30624865 (25 bp)
AGAAGAACGCTGATGTAGAAAGTGA
LOC_Os04g51960
Os.27997.1.S1_at--1089--4911Chr04:30624881..30624905 (25 bp)
GCTTGTTCCTGGGAAGGAGTATGAA
LOC_Os04g51960
Os.27997.1.S1_at--797--351Chr04:30624901..30624925 (25 bp)
ATGAAGGTTTGGAAATAGATGGGCC
LOC_Os04g51960
Os.27997.1.S1_at--1147--10031Chr04:30624916..30624940 (25 bp)
TAGATGGGCCAGAAGATGGCAAGAC
LOC_Os04g51960
Os.27997.1.S1_at--1062--6211Chr04:30624930..30624954 (25 bp)
GATGGCAAGACTTTAAAGGATGACA
LOC_Os04g51960
Os.27997.1.S1_at--799--2911Chr04:30624945..30624969 (25 bp)
AAGGATGACAGAAGGCATGCAAAGA
LOC_Os04g51960
Os.27997.1.S1_at--547--8031Chr04:30624988..30625012 (25 bp)
GGAGTGATGCAAAGAGTCATGGCAA
LOC_Os04g51960
Os.27997.1.S1_at--1088--1331Chr04:30625000..30625024 (25 bp)
AGAGTCATGGCAAAAGTTCTAGGAA
LOC_Os04g51960
Target Sequence 
CGGGCAAAGGTTTTTCAGACACACAAAGCCACCACGTNGCTGCAAGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCT
CTTGGTTTGGATGTTGATGATAAAGCGAAGAAGAACGCTGATGTAGAAAGTGATGTGGAATCTGGGGAGCTTGTTCCTGG
GAAGGAGTATGAAGGTTTGGAAATAGATGGGCCAGAAGATGGCAAGACTTTAAAGGATGACAGAAGGCATGCAAAGAAGG
GTAAGAAGGATAAAGGGAGTGATGCAAAGAGTCATGGCAAAAGTTCTAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis