Browse Element(s) Details


Os.51659.1.S1_at

Description gb:AK063294.1
DB_XREF= gi:32973312
TID=Os.51659.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E08, full insert sequence.
FL= gb:AK063294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5196011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51940Os.18168.1.S1_at10/114+30602055..30606441YT521-B-like family protein, expressed
LOC_Os04g51950Os.47874.1.S1_at11/114+30606477..30610501serine/threonine protein kinase, putative, expressed
LOC_Os04g51960Os.51659.1.S1_at11/114+30624132..30627267expressed protein
LOC_Os04g51960Os.27997.1.S1_at10/114+30624132..30627267expressed protein
LOC_Os04g51970Os.14574.1.S1_at11/114+30633216..30636973major facilitator superfamily protein, expressed
LOC_Os04g51980NANA4+30641585..30644054Transferase family protein
LOC_Os04g51990NANA4+30650588..30652665Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51659.1.S1_at--558--6051Chr04:30626582..30626606 (25 bp)
GAGATTTTGATAGCCGTGATCCGAA
LOC_Os04g51960
Os.51659.1.S1_at--344--8831Chr04:30626622..30626646 (25 bp)
TGATTCTTATCATCATTCTCGAAGG
LOC_Os04g51960
Os.51659.1.S1_at--1055--9491Chr04:30626638..30626662 (25 bp)
TCTCGAAGGGACTATGAACAGCGTT
LOC_Os04g51960
Os.51659.1.S1_at--629--3011Chr04:30626700..30626969 (25 bp)
AATGCAAGTCATGTCCATCTCTGGT
LOC_Os04g51960
Os.51659.1.S1_at--273--7271Chr04:30626959..30626981 (23 bp)
GTCCATCTCTGGTTTCTTCAAGCAG
LOC_Os04g51960
Os.51659.1.S1_at--1102--9031Chr04:30626990..30627014 (25 bp)
TGCATCTTTACATGAACCGAGCAGA
LOC_Os04g51960
Os.51659.1.S1_at--163--1531Chr04:30627009..30627033 (25 bp)
AGCAGATGATCGATGTCCTGCTCCC
LOC_Os04g51960
Os.51659.1.S1_at--471--9271Chr04:30627024..30627048 (25 bp)
TCCTGCTCCCTCAAGTTTTTCAGAG
LOC_Os04g51960
Os.51659.1.S1_at--812--6811Chr04:30627038..30627062 (25 bp)
GTTTTTCAGAGTCCTACCAGAAGAA
LOC_Os04g51960
Os.51659.1.S1_at--684--5051Chr04:30627071..30627095 (25 bp)
GCAGCAGTAAATCTCTCCTAGCAGT
LOC_Os04g51960
Os.51659.1.S1_at--1101--6511Chr04:30627227..30627251 (25 bp)
GATTTAACACTGTGCCCATGTGGTT
LOC_Os04g51960
Target Sequence 
GAGATTTTGATAGCCGTGATCCGAAAAGGTCTAGACATGATGATTCTTATCATCATTCTCGAAGGGACTATGAACAGCGT
TATTCTAGAGATGAATATAGAGACAGGAGGCATCGTTGAATGCAAGTCATGTCCATCTCTGGTTTCTTCAAGCAGAAGAG
GGATGCATCTTTACATGAACCGAGCAGATGATCGATGTCCTGCTCCCTCAAGTTTTTCAGAGTCCTACCAGAAGAAGACT
TGATGCAGCAGTAAATCTCTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCTTATGTTTGTATGAACTT
TCATACTTGTTGTTTTGTTGTGTGAATGATCAATATGTATTCTGGTGGATATAATTACCTTGTGTCTGCAAGAAATATAT
GATTTAACACTGTGCCCATGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis