Browse Element(s) Details


Os.18168.1.S1_at

Description gb:AK065298.1
DB_XREF= gi:32975316
TID=Os.18168.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N16, full insert sequence.
FL= gb:AK065298.1 gb:AK062217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5194010/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51900Os.50553.1.S1_at11/114+30571994..30579093nuclear pore complex protein, putative, expressed
LOC_Os04g51910Os.15719.1.S1_at11/114+30579644..30583982Proteasome/cyclosome repeat family protein, expressed
LOC_Os04g51920Os.49079.1.A1_at11/114+30586583..30589385PDI, putative, expressed
LOC_Os04g51930OsAffx.22535.1.S1_at10/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51930OsAffx.1528.1.S1_at5/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51940Os.18168.1.S1_at10/114+30602055..30606441YT521-B-like family protein, expressed
LOC_Os04g51950Os.47874.1.S1_at11/114+30606477..30610501serine/threonine protein kinase, putative, expressed
LOC_Os04g51960Os.51659.1.S1_at11/114+30624132..30627267expressed protein
LOC_Os04g51960Os.27997.1.S1_at10/114+30624132..30627267expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18168.1.S1_at--1014--7551Chr04:30605846..30605870 (25 bp)
GGGCCGTGCAGCTTGGAGAAACCAA
LOC_Os04g51940
Os.18168.1.S1_at--236--8811Chr04:30605925..30605949 (25 bp)
TGTTCCTGAGAACGAGCCTGTTGCT
LOC_Os04g51940
Os.18168.1.S1_at--316--1531Chr04:30605973..30605997 (25 bp)
AGCAGATTCAGAGCCAAGCCCTTTG
LOC_Os04g51940
Os.18168.1.S1_at--179--1811Chr04:30606017..30606041 (25 bp)
ACCCCTTTCATGTCTGATTGCGAGA
LOC_Os04g51940
Os.18168.1.S1_at--535--1511Chr04:30606042..30606066 (25 bp)
AGCAGCTGGGCCTTGTGATGTTCAC
LOC_Os04g51940
Os.18168.1.S1_at--131--8751Chr04:30606124..30606148 (25 bp)
TGTACTTCACCATAGGCTGCATTAT
LOC_Os04g51940
Os.18168.1.S1_at--691--5311Chr04:30606160..30606184 (25 bp)
GAAGGATTTGGTTCACCTCCAGTTA
LOC_Os04g51940
Os.18168.1.S1_at--1013--8771Chr04:30606193..30606217 (25 bp)
TGTTAGTCTTATGTTTCCTTCCCAA
LOC_Os04g51940
Os.18168.1.S1_at--171--10611Chr04:30606226..30606250 (25 bp)
TTCTGTTCTGTCATCTGTTCCACAA
LOC_Os04g51940
Os.18168.1.S1_at--1107--4411Chr04:30606306..30606330 (25 bp)
GCCAGAGCTCTGTACAGTTTGCAGT
LOC_Os04g51940
Os.18168.1.S1_at--280--6651NONE
GTTGTTCTCAATCTTTTCCTGTGAT
NONE
Target Sequence 
GGGCCGTGCAGCTTGGAGAAACCAAGGGCAGCAGGGAGGACAAACCAAAGGTTGAAGATGCTTCTGCTGCTGCTGTTGCT
GTTCCTGAGAACGAGCCTGTTGCTCTTGCTGAGACTGAAGGATTGTTAGCAGATTCAGAGCCAAGCCCTTTGAAGGAAAG
TGGTTGATCTTACCCCTTTCATGTCTGATTGCGAGAAGCAGCTGGGCCTTGTGATGTTCACATGGAAGCAAGAAGATCAA
AGGAGGTTGATATGTGAAAAAAAAAATGCTGCTTCTTTTGTACTTCACCATAGGCTGCATTATAGGCTGGAGGAGAAGGA
TTTGGTTCACCTCCAGTTAGGTTATGATGTTAGTCTTATGTTTCCTTCCCAATTTCTTCTTTCTGTTCTGTCATCTGTTC
CACAAGCGCCACCAAGAATGGTGCTCAGTGGTTTAGCCATAAGGAAAGCTGCATATATAGGCCAGAGCTCTGTACAGTTT
GCAGTTAAATTATGTTGTTCTCAATCTTTTCCTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis