Browse Element(s) Details


Os.50553.1.S1_at

Description gb:AK121814.1
DB_XREF= gi:37991437
TID=Os.50553.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098G21, full insert sequence.
FL= gb:AK099996.1 gb:AK121814.1 gb:AK065931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5190011/11nuclear pore complex protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51880Os.10635.1.S1_s_at11/114+30545402..30551639GHMP kinases putative ATP-binding protein, expressed
LOC_Os04g51890Os.57349.1.S1_at11/114+30564553..30565447Auxin responsive protein, expressed
LOC_Os04g51900Os.50553.1.S1_at11/114+30571994..30579093nuclear pore complex protein, putative, expressed
LOC_Os04g51910Os.15719.1.S1_at11/114+30579644..30583982Proteasome/cyclosome repeat family protein, expressed
LOC_Os04g51920Os.49079.1.A1_at11/114+30586583..30589385PDI, putative, expressed
LOC_Os04g51930OsAffx.22535.1.S1_at10/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51930OsAffx.1528.1.S1_at5/114+30592182..30597864retrotransposon protein, putative, LINE subclass
LOC_Os04g51940Os.18168.1.S1_at10/114+30602055..30606441YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50553.1.S1_at--1134--6551Chr04:30578557..30578581 (25 bp)
GATTCTGATTTCTCGAGCTTGTTAT
LOC_Os04g51900
Os.50553.1.S1_at--806--1671Chr04:30578684..30578708 (25 bp)
AGCCTGTTAACACTCGAAGCGCGTA
LOC_Os04g51900
Os.50553.1.S1_at--483--9811Chr04:30578729..30578753 (25 bp)
TAACGCTACTTGCAATGACCACCAG
LOC_Os04g51900
Os.50553.1.S1_at--382--1631Chr04:30578768..30578792 (25 bp)
AGCGGTTTTGATAACTTGCCCACTG
LOC_Os04g51900
Os.50553.1.S1_at--227--3331Chr04:30578788..30578812 (25 bp)
CACTGTAGTAGTTTCTCATCCTGGG
LOC_Os04g51900
Os.50553.1.S1_at--452--2851Chr04:30578829..30578853 (25 bp)
AAGTCTTGATTTCTTCGTGCTTCAC
LOC_Os04g51900
Os.50553.1.S1_at--1024--5271Chr04:30578906..30578930 (25 bp)
GAATGTTGCTCGGTCTTGATTATCA
LOC_Os04g51900
Os.50553.1.S1_at--3--751Chr04:30578944..30578968 (25 bp)
ATGTTACCAGCTTGTCTGCTTTGAC
LOC_Os04g51900
Os.50553.1.S1_at--280--6071Chr04:30578987..30579011 (25 bp)
GAGTTCTGTGCGCTAATTTGCTTGC
LOC_Os04g51900
Os.50553.1.S1_at--218--10711Chr04:30579008..30579032 (25 bp)
TTGCGTCTCGTGGTATGGTTTTTCA
LOC_Os04g51900
Os.50553.1.S1_at--918--10491Chr04:30579069..30579093 (25 bp)
TTCTTACGATACTGTTTGTTCCGGC
LOC_Os04g51900
Target Sequence 
GATTCTGATTTCTCGAGCTTGTTATCGCCCTTTTGAATCAAATCGCTACCAGTCCACTGTCTACTGTGGGTGTGTGNGCA
GAGTGCAACTTCAGGTGTTACTCTGCAAGGGGACGGCATCATGAACAAGCCTGTTAACACTCGAAGCGCGTATCAGCGTG
AAGGAAATCATGTAACGCTACTTGCAATGACCACCAGCATGTGTATCCAATAGCGGTTTTGATAACTTGCCCACTGTAGT
AGTTTCTCATCCTGGGGATTATGGGCGTATTTAAGTCTTGATTTCTTCGTGCTTCACTGAATTTGCACGGTCAGAGGTCC
AAACCGAACTTCAAAGCTGACGAGGTTGAGAATGTTGCTCGGTCTTGATTATCAACATGGCTGCATGATGTTACCAGCTT
GTCTGCTTTGACGATGTAAACCAGTTGGGAGAGTTCTGTGCGCTAATTTGCTTGCGTCTCGTGGTATGGTTTTTCAGTTG
GCNATATTTTGATTCATGGCCACCAATATTAGTTCTTACGATACTGTTTGTTCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis