Browse Element(s) Details


Os.10678.1.S1_at

Description gb:AK067147.1
DB_XREF= gi:32977165
TID=Os.10678.1
CNT=129
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.10678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098B06, full insert sequence.
FL= gb:AK104622.1 gb:AK059996.1 gb:AK104262.1 gb:AK104765.1 gb:AK067147.1 gb:AK104398.1 gb:AK061567.1 gb:AK104235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0599011/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_x_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.37820.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8018.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06010OsAffx.20745.1.S1_at11/1110+3030618..3034372retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10678.1.S1_at--782--6371Chr10:3005963..3005987 (25 bp)
GATCCGCACTGGACGTTTGATCATG
LOC_Os10g05990
Os.10678.1.S1_at--395--1951Chr10:3005970..3005994 (25 bp)
ACTGGACGTTTGATCATGCCGTCCT
LOC_Os10g05990
Os.10678.1.S1_at--858--4191Chr10:3005998..3006022 (25 bp)
CCCTGTCAGATTGTCTGCATAATAA
LOC_Os10g05990
Os.10678.1.S1_at--577--3431Chr10:3006054..3006078 (25 bp)
CATCGACAGGAGTTTTAATTTGTAC
LOC_Os10g05990
Os.10678.1.S1_at--587--8751Chr10:3006074..3006098 (25 bp)
TGTACTTGTATCTATTTCTTCTCTA
LOC_Os10g05990
Os.10678.1.S1_at--63--10331Chr10:3006088..3006112 (25 bp)
TTTCTTCTCTATCAAATGCAGTTAT
LOC_Os10g05990
Os.10678.1.S1_at--1043--3051Chr10:3006140..3006164 (25 bp)
AATCAGTACTGTTGTGGCGGACTAT
LOC_Os10g05990
Os.10678.1.S1_at--127--7551Chr10:3006153..3006177 (25 bp)
GTGGCGGACTATTCACTGTATCAGC
LOC_Os10g05990
Os.10678.1.S1_at--1002--10511Chr10:3006164..3006188 (25 bp)
TTCACTGTATCAGCCAAAGCCATTG
LOC_Os10g05990
Os.10678.1.S1_at--199--3291Chr10:3006178..3006202 (25 bp)
CAAAGCCATTGGATCGTAAGAGGTT
LOC_Os10g05990
Os.10678.1.S1_at--1139--6371Chr10:3006189..3006213 (25 bp)
GATCGTAAGAGGTTAGCATTGGTTA
LOC_Os10g05990
Target Sequence 
GATCCGCACTGGACGTTTGATCATGCCGTCCTGCCCCCTGTCAGATTGTCTGCATAATAACAGTTTGAGATCGAAGTCAT
GCATTAGCTTTCATCGACAGGAGTTTTAATTTGTACTTGTATCTATTTCTTCTCTATCAAATGCAGTTATATATGGTAAG
ATAATTTATTTATATNTNNAATCAGTACTGTTGTGGCGGACTATTCACTGTATCAGCCAAAGCCATTGGATCGTAAGAGG
TTAGCATTGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis