Browse Element(s) Details

Os.10696.1.S1_at

Description

gb:D17790.1
DB_XREF= gi:409782
TID=Os.10696.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10696 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ferredoxin-NADP+ reductase, complete cds.
PROD=ferredoxin-NADP+ reductase
FL= gb:D17790.1 gb:AK065063.1 gb:AK104865.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01850	11/11	Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01790	Os.52389.1.S1_x_at	11/11	6	+	453863..456206	expressed protein
LOC_Os06g01800	OsAffx.15220.1.S1_s_at	11/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.55780.1.S1_at	10/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.15220.2.S1_s_at	8/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.48472.1.A1_at	7/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.14814.1.S1_at	1/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01810	NA	NA	6	+	465385..466183	hypothetical protein
LOC_Os06g01820	OsAffx.10379.1.A1_at	2/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01820	Os.51646.1.S1_at	1/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01830	OsAffx.15222.1.S1_at	9/11	6	+	472151..472577	hypothetical protein
LOC_Os06g01840	Os.12745.1.S1_at	11/11	6	+	476099..478173	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01850	Os.10696.1.S1_at	11/11	6	+	478199..480658	Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os06g01860	Os.36672.1.S1_at	11/11	6	+	483347..484309	expressed protein
LOC_Os06g01860	Os.36672.2.S1_x_at	11/11	6	+	483347..484309	expressed protein
LOC_Os06g01870	NA	NA	6	+	488917..489695	hypothetical protein
LOC_Os06g01879	NA	NA	6	+	497435..498193	hypothetical protein
LOC_Os06g01890	NA	NA	6	+	501599..503591	retrotransposon protein, putative, unclassified
LOC_Os06g01899	NA	NA	6	+	504442..505200	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006118	biological_process	electron transport
GO:0016491	molecular_function	oxidoreductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10696.1.S1_at--1091--493	1	Chr06:478942..478966 (25 bp)	GCTTGGCTCTTCTTGGGAGTCCCAA	LOC_Os06g01850
Os.10696.1.S1_at--761--765	1	Chr06:478928..478952 (25 bp)	GGGAGTCCCAACTAGCAGTTCTTTA	LOC_Os06g01850
Os.10696.1.S1_at--760--1001	1	Chr06:478916..478940 (25 bp)	TAGCAGTTCTTTACTCTACAAGGAG	LOC_Os06g01850
Os.10696.1.S1_at--98--237	1	Chr06:478776..478800 (25 bp)	AAAGCGCCAGAGAACTTCCGGGTCG	LOC_Os06g01850
Os.10696.1.S1_at--286--1067	1	Chr06:478761..478785 (25 bp)	TTCCGGGTCGATTATGCTGTGAGCA	LOC_Os06g01850
Os.10696.1.S1_at--1115--387	1	Chr06:478745..478769 (25 bp)	CTGTGAGCAGGGAGCAGACCAATGC	LOC_Os06g01850
Os.10696.1.S1_at--799--627	1	Chr06:478708..478732 (25 bp)	GATGTACATTCAGACCAGGATGGCA	LOC_Os06g01850
Os.10696.1.S1_at--361--531	1	Chr06:478651..478675 (25 bp)	GAAGGACCACACCTATGTGTACATG	LOC_Os06g01850
Os.10696.1.S1_at--138--745	1	Chr06:478635..478659 (25 bp)	GTGTACATGTGTGGACTGAAAGGCA	LOC_Os06g01850
Os.10696.1.S1_at--21--209	1	Chr06:478592..478616 (25 bp)	ACATTATGGTGTCATTGGCTGCAAA	LOC_Os06g01850
Os.10696.1.S1_at--30--305	1	Chr06:478466..478490 (25 bp)	AATCGACTGGGCTGATTACAAGAAG	LOC_Os06g01850

Target Sequence

GCTTGGCTCTTCTTGGGAGTCCCAACTAGCAGTTCTTTACTCTACAAGGAGGAGTTTGACAAAATGAAGGCGAAAGCGCC
AGAGAACTTCCGGGTCGATTATGCTGTGAGCAGGGAGCAGACCAATGCTCAAGGAGAGAAGATGTACATTCAGACCAGGA
TGGCAGAGTACAAGGAAGAGCTGTGGGAGCTCCTGAAGAAGGACCACACCTATGTGTACATGTGTGGACTGAAAGGCATG
GAGAAGGGTATTGATGACATTATGGTGTCATTGGCTGCAAAAGATGGAATCGACTGGGCTGATTACAAGAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis