Browse Element(s) Details


Os.10703.1.S1_a_at

Description gb:AK072694.1
DB_XREF= gi:32982717
TID=Os.10703.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP synthase gamma chain, mitochondrial precursor (OSJNBa0053D03.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135E20, full insert sequence.
FL= gb:AK072694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1728011/11ATP synthase gamma chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17230NANA10+8334208..8336965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17240NANA10+8340121..8340327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17250Os.10703.2.S1_x_at1/1110+8340644..8346742retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17260Os.46551.1.S1_at11/1110+8347974..8349929Flavonoid 3'-monooxygenase, putative, expressed
LOC_Os10g17270OsAffx.30434.1.S1_at11/1110+8351456..8353955hypothetical protein
LOC_Os10g17270OsAffx.17567.1.S1_x_at1/1110+8351456..8353955hypothetical protein
LOC_Os10g17280Os.10703.1.S1_a_at11/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17280Os.10703.2.S1_x_at10/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17290OsAffx.20554.1.S1_at11/1110+8368042..8369336hypothetical protein
LOC_Os10g17300OsAffx.3761.1.S1_x_at2/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.30421.1.S1_s_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.18377.1.S1_x_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17310NANA10+8374691..8377727retrotransposon protein, putative, unclassified
LOC_Os10g17320Os.45977.1.S1_at1/1110+8381966..8385632retrotransposon protein, putative, unclassified
LOC_Os10g17320Os.55127.1.S1_at1/1110+8381966..8385632retrotransposon protein, putative, unclassified
LOC_Os10g17330OsAffx.20553.1.S1_at11/1110+8389166..8390194retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0015992biological_processproton transport
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10703.1.S1_a_at--1051--10511Chr10:8364789..8364813 (25 bp)
TTCAGAATCTTACCGAGTTCCAGTT
LOC_Os10g17280
Os.10703.1.S1_a_at--339--4231Chr10:8364801..8364822 (22 bp)
CCGAGTTCCAGTTTTCTTGTGTTAT
LOC_Os10g17280
Os.10703.1.S1_a_at--416--7431Chr10:8364993..8365015 (23 bp)
GTGTTATGTATAATGCTGCTCTAGA
LOC_Os10g17280
Os.10703.1.S1_a_at--705--9111Chr10:8365004..8365028 (25 bp)
TGCTGCTCTAGAGAATGCATGCAGT
LOC_Os10g17280
Os.10703.1.S1_a_at--536--8131Chr10:8365055..8365079 (25 bp)
GGACAGCTCCAGCAGAAACGCTGGT
LOC_Os10g17280
Os.10703.1.S1_a_at--383--8971Chr10:8365079..8365103 (25 bp)
TGAAATGCTTGATCGACTCACCCTC
LOC_Os10g17280
Os.10703.1.S1_a_at--746--9691Chr10:8365102..8365460 (25 bp)
TCACATACAACAGGACACGTCAAGC
LOC_Os10g17280
Os.10703.1.S1_a_at--623--5631Chr10:8365449..8365473 (25 bp)
GACACGTCAAGCATCTATCACTACA
LOC_Os10g17280
Os.10703.1.S1_a_at--545--9691Chr10:8365466..8365490 (25 bp)
TCACTACAGAGCTCATTGAGATTAT
LOC_Os10g17280
Os.10703.1.S1_a_at--528--10771Chr10:8365481..8365505 (25 bp)
TTGAGATTATCTCTGGCGCTTCTGC
LOC_Os10g17280
Os.10703.1.S1_a_at--65--9471Chr10:8365492..8365516 (25 bp)
TCTGGCGCTTCTGCCCTTGAGGGAT
LOC_Os10g17280
Target Sequence 
TTCAGAATCTTACCGAGTTCCAGTTTTCTTGTGTTATGTATAATGCTGCTCTAGAGAATGCATGCAGTGAGCTTGGAGCA
CGTATGTCTGCNCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTTGATCGACTCACCCTCACATACAACAGGACAC
GTCAAGCATCTATCACTACAGAGCTCATTGAGATTATCTCTGGCGCTTCTGCCCTTGAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10703.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis