Browse Element(s) Details


Os.10703.2.S1_x_at

Description gb:NM_195647.1
DB_XREF= gi:37532653
TID=Os.10703.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10703 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ATP synthase gamma chain, mitochondrial precursor (OSJNBa0053D03.10), mRNA.
PROD=putative ATP synthase gamma chain, mitochondrialprecursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1728010/11ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os04g102001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g172501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g591801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g015601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g305801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g250901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g216101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g233101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g130301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g357401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g384201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g089101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g134001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g299301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g098701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g245901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g532801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g354401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g339001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g297601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g122261/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g070201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g311901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g165501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g473801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g059301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g166901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17230NANA10+8334208..8336965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17240NANA10+8340121..8340327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17250Os.10703.2.S1_x_at1/1110+8340644..8346742retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17260Os.46551.1.S1_at11/1110+8347974..8349929Flavonoid 3'-monooxygenase, putative, expressed
LOC_Os10g17270OsAffx.30434.1.S1_at11/1110+8351456..8353955hypothetical protein
LOC_Os10g17270OsAffx.17567.1.S1_x_at1/1110+8351456..8353955hypothetical protein
LOC_Os10g17280Os.10703.1.S1_a_at11/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17280Os.10703.2.S1_x_at10/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17290OsAffx.20554.1.S1_at11/1110+8368042..8369336hypothetical protein
LOC_Os10g17300OsAffx.3761.1.S1_x_at2/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.30421.1.S1_s_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.18377.1.S1_x_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17310NANA10+8374691..8377727retrotransposon protein, putative, unclassified
LOC_Os10g17320Os.45977.1.S1_at1/1110+8381966..8385632retrotransposon protein, putative, unclassified
LOC_Os10g17320Os.55127.1.S1_at1/1110+8381966..8385632retrotransposon protein, putative, unclassified
LOC_Os10g17330OsAffx.20553.1.S1_at11/1110+8389166..8390194retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0015992biological_processproton transport
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10703.2.S1_x_at--636--5371Chr10:8362762..8362786 (25 bp)
GAAGAACCCTATCAACTACACACAG
LOC_Os10g17280
Os.10703.2.S1_x_at--213--7551Chr10:8364034..8364058 (25 bp)
GTGGCGCAAAGTTGTGCAGTTAGCA
LOC_Os10g17280
Os.10703.2.S1_x_at--242--5051Chr10:8364056..8364080 (25 bp)
GCAGAATTAGTTTCAGCTGTGTTAA
LOC_Os10g17280
Os.10703.2.S1_x_at--916--9931Chr10:8364082..8364106 (25 bp)
TACGTTGCAGCAGAAGTTCACGGAT
LOC_Os10g17280
Os.10703.2.S1_x_at--815--6751NONE
GTTCACGGATGTGATTGCTGTGCTG
NONE
Os.10703.2.S1_x_at--439--66928Chr10:8364557..8364581 (25 bp)
GTTCCACTCGGTCATATCATTCAAG
LOC_Os10g17280
Os.10703.2.S1_x_at--376--671Chr10:8364588..8364612 (25 bp)
ATGACAACCATACTTTCCCCAGAGG
LOC_Os10g17280
Os.10703.2.S1_x_at--279--9971Chr10:8364799..8364822 (24 bp)
TACCGAGTTCCAGTTTTCTTGTGTT
LOC_Os10g17280
Os.10703.2.S1_x_at--533--1551Chr10:8365030..8365054 (25 bp)
AGCTTGGAGCACGTATGTCTGCCAT
LOC_Os10g17280
Os.10703.2.S1_x_at--384--8971Chr10:8365079..8365103 (25 bp)
TGAAATGCTTGATCGACTCACCCTC
LOC_Os10g17280
Os.10703.2.S1_x_at--776--8131Chr10:8365448..8365472 (25 bp)
GGACACGTCAAGCATCTATCACTAC
LOC_Os10g17280
Target Sequence 
GAAGAACCCTATCAACTACACACAGGATAAGGAATGGCACTGGTGGTGGCGCAAAGTTGTGCAGTTAGCAGAATTAGTTT
CAGCTGTGTTAATTACGTTGCAGCAGAAGTTCACGGATGTGATTGCTGTGCTGGCAGATGATATCTTGAAAAATGTTGAG
TATGATGCTCTAAGGGTTGTTTTTAACAAGTTCCACTCGGTCATATCATTCAAGCCCACAATGACAACCATACTTTCCCC
AGAGGTTATGGAGAAAGAATCGGAATCTGGTAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAGGTGAAACTAAAT
CAGAAATTCTTCAGAATCTTACCGAGTTCCAGTTTTCTTGTGTTATGTATAATGCTGCTCTAGAGAATGCATGCAGTGAG
CTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAAACGCTGGTGAAATGCTTGATCGACTCACCCTCACATACAA
CAGGACACGTCAAGCATCTATCACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10703.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis