Browse Element(s) Details


Os.10731.1.A1_a_at

Description gb:AK106894.1
DB_XREF= gi:32992103
TID=Os.10731.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G10, full insert sequence.
FL= gb:AK106894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3317011/11retrotransposon protein, putative, unclassified
LOC_Os07g1300011/11retrotransposon protein, putative, unclassified
LOC_Os04g0485011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g1813011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g1434011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g2543011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g2387011/11retrotransposon protein, putative, unclassified
LOC_Os08g1121011/11retrotransposon protein, putative, unclassified
LOC_Os03g2318011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g1397011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g4195011/11hypothetical protein
LOC_Os08g3552011/11retrotransposon protein, putative, unclassified
LOC_Os05g1511011/11hypothetical protein
LOC_Os12g1159011/11retrotransposon protein, putative, unclassified
LOC_Os04g1552011/11retrotransposon protein, putative, unclassified
LOC_Os05g1990011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g1896011/11retrotransposon protein, putative, unclassified
LOC_Os05g1784011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g0428011/11retrotransposon protein, putative, unclassified
LOC_Os06g0325011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g1116011/11retrotransposon protein, putative, unclassified
LOC_Os05g1792011/11retrotransposon protein, putative, unclassified
LOC_Os12g1160010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g474349/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g183709/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g053409/11retrotransposon protein, putative, unclassified
LOC_Os10g242308/11retrotransposon protein, putative, unclassified
LOC_Os04g053308/11Protein kinase domain containing protein
LOC_Os12g235008/11retrotransposon protein, putative, unclassified
LOC_Os12g144207/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g376907/11retrotransposon protein, putative, unclassified
LOC_Os03g341107/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g260147/11Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os05g445105/11retrotransposon protein, putative, unclassified
LOC_Os06g252105/11Zinc knuckle family protein
LOC_Os09g100903/11retrotransposon protein, putative, unclassified
LOC_Os03g466202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g542702/11transposon protein, putative, unclassified, expressed
LOC_Os02g018802/11Sec63 domain containing protein
LOC_Os06g198542/11retrotransposon protein, putative, unclassified
LOC_Os11g240302/11retrotransposon protein, putative, unclassified
LOC_Os12g120401/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33120Os.56717.1.S1_at11/117+19777805..19781012expressed protein
LOC_Os07g33130OsAffx.20169.1.S1_at5/117+19781628..19785126retrotransposon protein, putative, unclassified
LOC_Os07g33139NANA7+19788227..19789670NA
LOC_Os07g33150NANA7+19794512..19797363Zinc knuckle family protein
LOC_Os07g33160NANA7+19797703..19798788retrotransposon protein, putative, unclassified
LOC_Os07g33170Os.10731.1.A1_a_at11/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_x_at8/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_at7/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170Os.46610.1.S1_x_at5/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.4.S1_x_at4/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.1.S1_at4/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.5.S1_x_at3/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_s_at2/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33180NANA7+19804829..19807073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g33190NANA7+19813123..19817329retrotransposon protein, putative, unclassified
LOC_Os07g33200Os.49620.1.S1_at11/117+19825595..19831501expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10731.1.A1_a_at--847--109290Chr12:6284085..6284109 (25 bp)
AGTGGAGCCGGAGCTTCGCTAGATT
LOC_Os12g11590
Os.10731.1.A1_a_at--673--587295Chr12:6284089..6284113 (25 bp)
GAGCCGGAGCTTCGCTAGATTTTAT
LOC_Os12g11590
Os.10731.1.A1_a_at--966--447257Chr12:6284091..6284115 (25 bp)
GCCGGAGCTTCGCTAGATTTTATTT
LOC_Os12g11590
Os.10731.1.A1_a_at--538--395279Chr12:6284093..6284117 (25 bp)
CGGAGCTTCGCTAGATTTTATTTTC
LOC_Os12g11590
Os.10731.1.A1_a_at--844--591274Chr12:6284095..6284119 (25 bp)
GAGCTTCGCTAGATTTTATTTTCCG
LOC_Os12g11590
Os.10731.1.A1_a_at--187--487248Chr12:6284102..6284126 (25 bp)
GCTAGATTTTATTTTCCGCTGCAGT
LOC_Os12g11590
Os.10731.1.A1_a_at--1130--369250Chr12:6284103..6284127 (25 bp)
CTAGATTTTATTTTCCGCTGCAGTT
LOC_Os12g11590
Os.10731.1.A1_a_at--214--1005251Chr12:2065394..2065418 (25 bp)
TAGATTTTATTTTCCGCTGCAGTTT
NONE
Os.10731.1.A1_a_at--1084--125252Chr12:6284105..6284129 (25 bp)
AGATTTTATTTTCCGCTGCAGTTTT
LOC_Os12g11590
Os.10731.1.A1_a_at--822--1037256Chr12:6284108..6284132 (25 bp)
TTTTATTTTCCGCTGCAGTTTTCTT
LOC_Os12g11590
Os.10731.1.A1_a_at--704--1035251Chr12:6284109..6284133 (25 bp)
TTTATTTTCCGCTGCAGTTTTCTTC
LOC_Os12g11590
Target Sequence 
AGTGGAGCCGGAGCTTCGCTAGATTTTATTTTCCGCTGCAGTTTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10731.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis