Browse Element(s) Details


Os.10763.2.S1_x_at

Description gb:AK067787.1
DB_XREF= gi:32977805
TID=Os.10763.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116N19, full insert sequence.
FL= gb:AK067787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3465011/11hypothetical protein
LOC_Os11g037203/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34600NANA11+19746646..19752225retrotransposon protein, putative, unclassified
LOC_Os11g34610OsAffx.19158.1.S1_at9/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34610OsAffx.19159.1.S1_at2/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34624OsAffx.7293.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624OsAffx.19159.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624Os.48647.1.A1_at1/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34640NANA11+19775335..19776520hypothetical protein
LOC_Os11g34650Os.10763.1.S1_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34650Os.10763.2.S1_x_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34660OsAffx.30202.1.S1_x_at3/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os11g34660OsAffx.6233.1.S1_at3/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os11g34660Os.35273.2.S1_at1/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10763.2.S1_x_at--172--3051Chr11:19778752..19778776 (25 bp)
AATCGAATAGCTGCTCAGTTCCTCC
LOC_Os11g34650
Os.10763.2.S1_x_at--386--8912Chr11:1446412..1446434 (23 bp)
TGAGCAACCGGCGTTGAGGACCTCC
LOC_Os11g03720
Os.10763.2.S1_x_at--971--4312Chr11:1446437..1446459 (23 bp)
CCTTGGCACCCGAGAAGAGGTTGTT
LOC_Os11g03720
Os.10763.2.S1_x_at--998--8251Chr11:19778429..19778453 (25 bp)
GGCAGGCAATATTTCCTAAACACTT
LOC_Os11g34650
Os.10763.2.S1_x_at--196--10832Chr11:1447843..1447867 (25 bp)
TTGGACGGAGGCATATAACCTCTTC
LOC_Os11g03720
Os.10763.2.S1_x_at--681--2911Chr11:19777557..19777581 (25 bp)
AAGGATCTTCCTGTCAATGTAAAAT
LOC_Os11g34650
Os.10763.2.S1_x_at--773--2452Chr11:1447914..1447938 (25 bp)
AACAATCTCTGTTGGTAGGTAATAC
NONE
Os.10763.2.S1_x_at--460--1271Chr11:19777488..19777512 (25 bp)
AGATAATACTCCATCTCAGTGGCCG
LOC_Os11g34650
Os.10763.2.S1_x_at--624--451Chr11:19777476..19777500 (25 bp)
ATCTCAGTGGCCGATGACAATGCAG
LOC_Os11g34650
Os.10763.2.S1_x_at--662--1231Chr11:19777395..19777419 (25 bp)
AGTTGCAACTTACGCACTACTGCAC
LOC_Os11g34650
Os.10763.2.S1_x_at--137--3172Chr11:1448064..1448088 (25 bp)
CAACCTACTTGTGCCGTTTAGACAT
NONE
Target Sequence 
AATCGAATAGCTGCTCAGTTCCTCCTCTGCATTCTAACATGCTGAGCAACCGGCGTTGAGGACCTCCTTGGCACCCGAGA
AGAGGTTGTTGGTCTGGAGCGGTACTGAAGGCAGGCAATATTTCCTAAACACTTCAAAATGGATAGAGGAATTCAGAACT
GAGGGGCAGTGATTTCTATAATTGTGCTGATTAGGAACAAAACTGATCGTGTTGACAAGAGATTGGACGGAGGCATATAA
CCTCTTCAAAGAACCAAGGTATCAAGGATCTTCCTGTCAATGTAAAATAAAAAAATAAACAATCTCTGTTGGTAGGTAAT
ACTACAATGTTGAGATAATACTCCATCTCAGTGGCCGATGACAATGCAGAGGAATAGTTTCTAGAGCCAAAGGGTGAACA
TCAAGGTTTAATACTTCAAGGTTTAAGTTGCAACTTACGCACTACTGCACCAACCTACTTGTGCCGTTTAGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10763.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis