Browse Element(s) Details


OsAffx.19159.1.S1_at

Description tigr:9639.m03124
TID=OsAffx.19159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3462411/11Protein kinase domain containing protein, expressed
LOC_Os11g346102/11Serine/threonine-protein kinase receptor precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34570OsAffx.19157.1.S1_at10/1111+19738097..19739375LysM domain containing protein
LOC_Os11g34580OsAffx.31297.1.S1_at11/1111+19740269..19740538hypothetical protein
LOC_Os11g34590Os.28943.1.S1_x_at2/1111+19742786..19746022retrotransposon protein, putative, unclassified
LOC_Os11g34600NANA11+19746646..19752225retrotransposon protein, putative, unclassified
LOC_Os11g34610OsAffx.19158.1.S1_at9/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34610OsAffx.19159.1.S1_at2/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34624OsAffx.7293.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624OsAffx.19159.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624Os.48647.1.A1_at1/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34640NANA11+19775335..19776520hypothetical protein
LOC_Os11g34650Os.10763.1.S1_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34650Os.10763.2.S1_x_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34660OsAffx.30202.1.S1_x_at3/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os11g34660OsAffx.6233.1.S1_at3/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os11g34660Os.35273.2.S1_at1/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19159.1.S1_at--220--2451Chr11:19770358..19770382 (25 bp)
AAAATCTTGTGAGACTTGTTGGTGT
LOC_Os11g34624
OsAffx.19159.1.S1_at--929--1531Chr11:19770435..19770456 (22 bp)
AGCTTGGATACCATCCTTTTCGATC
LOC_Os11g34624
OsAffx.19159.1.S1_at--171--311Chr11:19770442..19770556 (25 bp)
ATACCATCCTTTTCGATCCGGATAA
LOC_Os11g34624
OsAffx.19159.1.S1_at--348--10391Chr11:19770679..19770703 (25 bp)
TTCTATTAGACTCCGATTTGACTCC
LOC_Os11g34624
OsAffx.19159.1.S1_at--92--9371Chr11:19770767..19770955 (25 bp)
TCGAGTAGCTGGGACATATGGATAT
LOC_Os11g34624
OsAffx.19159.1.S1_at--14--8252Chr11:19770958..19770982 (25 bp)
GGCACCTGAATACGCAATGTTTGGA
LOC_Os11g34624
OsAffx.19159.1.S1_at--800--5592Chr11:19770981..19771005 (25 bp)
GACAATATTCCGTCAAGTCTGATGT
LOC_Os11g34624
OsAffx.19159.1.S1_at--296--6731Chr11:19771019..19771043 (25 bp)
GTTCTTATTCTAGAGATTGTCACAG
LOC_Os11g34624
OsAffx.19159.1.S1_at--1015--2711Chr11:19771051..19771075 (25 bp)
AAGCATGGGCTCATACAGTGATCAT
LOC_Os11g34624
OsAffx.19159.1.S1_at--1128--7391Chr11:19771068..19771092 (25 bp)
GTGATCATGAGCAATCTTTCAACCT
LOC_Os11g34624
OsAffx.19159.1.S1_at--834--3171Chr11:19771079..19771102 (24 bp)
CAATCTTTCAACCTCTTAGACCTTA
LOC_Os11g34624
Target Sequence 
AAAATCTTGTGAGACTTGTTGGTGTTTGTGTGGAAAACCAAGAAAAGTTGCTCGTGTATGAGTACATGCCCAAAAGAAGC
TTGGATACCATCCTTTTCGATCCGGATAAAAGCAGGGAATTAAGTTGGGAGAAGAGATTGAAAATCATAATTGAAATTGC
TCGAGGTTTAGAGTACCTGCATGAAGAGTCTAGATTGAAGATCATCCACCGCGATCTCAAGGCAAATAACATTCTATTAG
ACTCCGATTTGACTCCAAAGATTTCAGACTTTGGATTGGCAAAGTTATTTGGAGCAGATCAATCTCATGTTATCACAAAT
CGAGTAGCTGGGACATATGGATATATGGCACCTGAATACGCAATGTTTGGACAATATTCCGTCAAGTCTGATGTATTCAG
CTTTGGTGTTCTTATTCTAGAGATTGTCACAGGAAGAAGAAGCATGGGCTCATACAGTGATCATGAGCAATCTTTCAACC
TCTTAGACCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis