Browse Element(s) Details


OsAffx.19157.1.S1_at

Description tigr:9639.m03118
TID=OsAffx.19157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LysM domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3457010/11LysM domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34500NANA11+19707664..19713629retrotransposon protein, putative, unclassified
LOC_Os11g34510NANA11+19717657..19718808retrotransposon protein, putative, unclassified
LOC_Os11g34520Os.28943.1.S1_x_at3/1111+19720858..19724444retrotransposon protein, putative, unclassified
LOC_Os11g34540NANA11+19728609..19729844retrotransposon protein, putative, unclassified
LOC_Os11g34550NANA11+19730703..19732974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34560NANA11+19736037..19736345transposon protein, putative, unclassified
LOC_Os11g34570OsAffx.19157.1.S1_at10/1111+19738097..19739375LysM domain containing protein
LOC_Os11g34580OsAffx.31297.1.S1_at11/1111+19740269..19740538hypothetical protein
LOC_Os11g34590Os.28943.1.S1_x_at2/1111+19742786..19746022retrotransposon protein, putative, unclassified
LOC_Os11g34600NANA11+19746646..19752225retrotransposon protein, putative, unclassified
LOC_Os11g34610OsAffx.19158.1.S1_at9/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34610OsAffx.19159.1.S1_at2/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34624OsAffx.7293.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624OsAffx.19159.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624Os.48647.1.A1_at1/1111+19763038..19774617Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
GO:0031225cellular_componentanchored to membrane
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19157.1.S1_at--1011--3371Chr11:19738409..19738433 (25 bp)
CAGCCCTTCCACATCATACAGATAA
LOC_Os11g34570
OsAffx.19157.1.S1_at--29--4111Chr11:19738435..19738459 (25 bp)
CGACAATATGTCCTATATCGCCGCT
LOC_Os11g34570
OsAffx.19157.1.S1_at--1012--231Chr11:19738449..19738473 (25 bp)
ATATCGCCGCTCAATTTGACGACTT
LOC_Os11g34570
OsAffx.19157.1.S1_at--720--8911Chr11:19738465..19738489 (25 bp)
TGACGACTTCGTGACCTACCAGGAG
LOC_Os11g34570
OsAffx.19157.1.S1_at--114--471Chr11:19738508..19738532 (25 bp)
ATCTCCAATCCTGACTTCCTGGAAG
LOC_Os11g34570
OsAffx.19157.1.S1_at--466--2231Chr11:19738587..19738611 (25 bp)
ACAATGTGACGCACTTTGCCTACAA
LOC_Os11g34570
OsAffx.19157.1.S1_at--1061--10691Chr11:19738602..19738626 (25 bp)
TTGCCTACAAAGTCCGTGCCGCGGA
LOC_Os11g34570
OsAffx.19157.1.S1_at--418--2591Chr11:19738628..19738652 (25 bp)
AACGTATCGAAGATCGCCGCGAGGT
LOC_Os11g34570
OsAffx.19157.1.S1_at--411--7691Chr11:19738656..19738680 (25 bp)
GGGTCAAGGAATCTACGCTGCTGAA
LOC_Os11g34570
OsAffx.19157.1.S1_at--432--9951Chr11:19738669..19738693 (25 bp)
TACGCTGCTGAAGATCAACGGGATC
LOC_Os11g34570
OsAffx.19157.1.S1_at--844--6551NONE
GATTCTTGATGTCCCGGTACCTGAT
NONE
Target Sequence 
CAGCCCTTCCACATCATACAGATAAACGACAATATGTCCTATATCGCCGCTCAATTTGACGACTTCGTGACCTACCAGGA
GATCGCCGCCGCGAGCAACATCTCCAATCCTGACTTCCTGGAAGTCGGGCAGGAGCTCTGGATCCCACTTCCCTGCAGCT
GCGACCAGGTGGAGGGGAACAATGTGACGCACTTTGCCTACAAAGTCCGTGCCGCGGACAACGTATCGAAGATCGCCGCG
AGGTTTGGGGTCAAGGAATCTACGCTGCTGAAGATCAACGGGATCACCGATCCCAAAAACCTCACCCAGGGGCAGATTCT
TGATGTCCCGGTACCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis