Browse Element(s) Details


Os.10784.1.S1_at

Description gb:AB112061.1
DB_XREF= gi:31711498
GEN=OsCTTP
TID=Os.10784.1
CNT=326
FEA=FLmRNA
TIER=FL+Stack
STK=138
UG=Os.10784 (NCBI UniGene Cluster)
UG_TITLE=(indica cultivar-group) OsCTTP gene, complete cds
DEF=Oryza sativa (indica cultivar-group) OsCTTP gene, complete cds.
FL= gb:AK104516.1 gb:AK071205.1 gb:AK104503.1 gb:AK104351.1 gb:AK104187.1 gb:AK104241.1 gb:AB112061.1 gb:AK104223.1 gb:AK119187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2670010/11ChaC-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26660Os.49306.1.S1_at11/112+15644370..15649639oligoribonuclease, putative, expressed
LOC_Os02g26670OsAffx.24437.1.S1_at11/112+15653602..15654807expressed protein
LOC_Os02g26680NANA2+15662333..15662665hypothetical protein
LOC_Os02g26690OsAffx.19542.3.S1_x_at4/112+15664361..15669683retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26700Os.10784.1.S1_at10/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26700Os.39083.1.A1_x_at1/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26710OsAffx.24439.1.S1_at11/112+15684765..15685157cyclo-DOPA 5-O-glucosyltransferase, putative
LOC_Os02g26720Os.53176.1.S1_at11/112+15691973..15693281Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os02g26730OsAffx.12210.1.S1_at7/112+15698435..15698638hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10784.1.S1_at--490--8991Chr02:15671421..15671445 (25 bp)
TGAAGCCAGCTGTGACAGGTGTACT
LOC_Os02g26700
Os.10784.1.S1_at--690--3891Chr02:15671326..15671436 (25 bp)
CTGTGACAGGTGTACTAGTCTTTGT
LOC_Os02g26700
Os.10784.1.S1_at--796--8232Chr10:5896945..5896969 (25 bp)
GGCAACAAATACTATCTTGGGCCTG
NONE
Os.10784.1.S1_at--745--3811Chr02:15671259..15671281 (23 bp)
CTCCTTTGGAGGACATGGCAAGGCA
LOC_Os02g26700
Os.10784.1.S1_at--441--8231Chr02:15671151..15671171 (21 bp)
GGCAAGGCAAATTGCTACAGCCAAT
LOC_Os02g26700
Os.10784.1.S1_at--30--2211Chr02:15670749..15670773 (25 bp)
ACAAAAATCTCACGCTCTCGTACAC
LOC_Os02g26700
Os.10784.1.S1_at--530--6071NONE
GAGTTTAACAGGTCTGCTTCGAGCT
NONE
Os.10784.1.S1_at--1079--7611Chr02:15670581..15670605 (25 bp)
GGGAACCAGAATGTGCTGATTTTCT
LOC_Os02g26700
Os.10784.1.S1_at--343--4751Chr02:15670567..15670591 (25 bp)
GCTGATTTTCTTTCGCAACCGCTGC
LOC_Os02g26700
Os.10784.1.S1_at--639--7051Chr02:15670533..15670557 (25 bp)
GTAACTTTCATTTTGCTAATACTAG
LOC_Os02g26700
Os.10784.1.S1_at--692--2031Chr02:15670513..15670537 (25 bp)
ACTAGAGCCGAGACTGGTGTGCTGC
LOC_Os02g26700
Target Sequence 
TGAAGCCAGCTGTGACAGGTGTACTAGTCTTTGTATCCACTCCNTGATCCAGTAGGCAACAAATACTATCTTGGGCCTGC
TCCTTTGGAGGACATGGCAAGGCAAATTGCTACAGCCAATGGCCCCAATGGGAATAACAGGGATTACCTGTTCTCAATGG
AGAAGGCATTGTCCAACATATGCCATGAAGATGATTCAATCATCGAGCTAGCTAACGAGGTCAGGAAGGTGTTGAGCCGG
CCGAAGGAGAAGATCACTGGCTCCGATAGCCCACAAAAATCTCACGCTCTCGTACACCTGTCTGCGCTTCCTGAGGGCAC
TGTTGTGGACTCAAGATAGCAAGCTCGGCGGTGGAAGAGATGAGATCTCCTCTGACCTACTCACTCTTGACGCTGGATTG
AACGAGTTTAACAGGTCTGCTTCGAGCTCCCTGGCACACTGGGGAACCAGAATGTGCTGATTTTCTTTCGCAACCGCTGC
GGCAATGCTGTAACTTTCATTTTGCTAATACTAGAGCCGAGACTGGTGTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis