Browse Element(s) Details


Os.10790.1.A1_at

Description gb:CB666636
DB_XREF= gi:29670361
DB_XREF=OSJNEd13J20.r
CLONE=OSJNEd13J20
TID=Os.10790.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10790 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3908011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39060OsAffx.26382.1.S1_at11/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39060Os.54692.1.S1_at1/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39070OsAffx.4024.1.S1_at11/114+23000985..23002817F-box domain containing protein
LOC_Os04g39080Os.10790.1.A1_at11/114+23007093..23009134F-box domain containing protein, expressed
LOC_Os04g39090Os.17975.1.S1_x_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39090Os.17975.2.S1_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39100OsAffx.26383.1.S1_at11/114+23016909..23018081Peroxidase 65 precursor, putative, expressed
LOC_Os04g39110Os.46435.1.S1_s_at11/114+23023196..23024086Gibberellin regulated protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10790.1.A1_at--904--6271Chr04:23007752..23007776 (25 bp)
GATGTTCCCCTACTTGACAACCTTG
LOC_Os04g39080
Os.10790.1.A1_at--675--3631Chr04:23007731..23007755 (25 bp)
CTTGCTCCTCAACGAGTGTGACATT
LOC_Os04g39080
Os.10790.1.A1_at--893--6971Chr04:23007698..23007722 (25 bp)
GTACCACGTGTTGAGGAGCATCCTT
LOC_Os04g39080
Os.10790.1.A1_at--227--10771Chr04:23007688..23007712 (25 bp)
TTGAGGAGCATCCTTCAGAACGCCC
LOC_Os04g39080
Os.10790.1.A1_at--1046--8531Chr04:23007657..23007681 (25 bp)
TGGAGCAGCTTAGACTACACAATTG
LOC_Os04g39080
Os.10790.1.A1_at--1138--611Chr04:23007478..23007502 (25 bp)
ATGCTCTAGCTCAACATTGTCTTCC
LOC_Os04g39080
Os.10790.1.A1_at--998--1071Chr04:23007433..23007457 (25 bp)
AGTGGAAATCAAGCACCCGCGCGGT
LOC_Os04g39080
Os.10790.1.A1_at--186--8271Chr04:23007274..23007298 (25 bp)
GGCATGCTTTTATTTTTCATATGGA
LOC_Os04g39080
Os.10790.1.A1_at--1005--4931Chr04:23007175..23007199 (25 bp)
GCATTGTCAAATGTCAAGCCATGTT
LOC_Os04g39080
Os.10790.1.A1_at--544--8131Chr04:23007139..23007163 (25 bp)
GGACATGCTTTGTTGCTACTGCACA
LOC_Os04g39080
Os.10790.1.A1_at--443--4851Chr04:23007125..23007149 (25 bp)
GCTACTGCACATTGTAACACCTTGT
LOC_Os04g39080
Target Sequence 
GATGTTCCCCTACTTGACAACCTTGCTCCTCAACGAGTGTGACATTGGATACAAGTACCACGTGTTGAGGAGCATCCTTC
AGAACGCCCCAAATNTGGAGCAGCTTAGACTACACAATTGCAAGTTTGTAGGTAAATCGAGGAGGAAGGCTGGGCAAACC
CAGTCGAAGGAGAAAACTTCAAAATGCTCTAGCTCAACATTGTCTTCCGCGTGCAGCAGTTTGAAGTCAGTGGAAATCAA
GCACCCGCGCGGTGAACCTTNNTCATGATCTTTTACATGAATTTCTGAAGGAAATACCACACAATCAATGGAGGAAGAGA
TCAATTGATGAGGAGACAATATCAATCGAGCTCAATAGAAAGTAGAACAAAAGAATTGCAATATAGGAGGCATGCTTTTA
TTTTTCATATGGAACAGTTTGACCAAATTGGTCTAACTAGTTAGTATATAATAAAATCATATGTAGATGTTACACCATTA
TGTAATTGCATTGTCAAATGTCAAGCCATGTTTGAATGTTNGAGGACATGCTTTGTTGCTACTGCACATTGTAACACCTT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10790.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis