Browse Element(s) Details


Os.10833.1.S1_at

Description gb:AK066924.1
DB_XREF= gi:32976942
TID=Os.10833.1
CNT=58
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089D14, full insert sequence.
FL= gb:AK066924.1 gb:AK104800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4443011/11synaptobrevin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44380Os.37672.1.S1_at11/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44380Os.12334.1.S1_x_at5/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44390Os.37533.1.S1_at11/118+27798872..27801533EF hand family protein, expressed
LOC_Os08g44400Os.5986.1.S1_at11/118+27805389..27808316Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed
LOC_Os08g44440Os.12998.1.S1_at11/118+27826616..27830199Multiple myeloma tumor-associated protein 2 homolog, putative, expressed
LOC_Os08g44450Os.12334.1.S1_x_at11/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44450Os.12334.2.S1_at5/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44460Os.12405.1.S1_at11/118+27833353..27835109expressed protein
LOC_Os08g44460OsAffx.17513.1.S1_at10/118+27833353..27835109expressed protein
LOC_Os08g44470OsAffx.6135.1.S1_s_at11/118+27835512..27837858expressed protein
LOC_Os08g44480Os.33777.1.S1_at11/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44480OsAffx.29659.2.S1_s_at10/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44490NANA8+27846694..27849986retrotransposon protein, putative, unclassified
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10833.1.S1_at--699--1111Chr08:27824919..27824943 (25 bp)
AGTGAAAGCACACCTCACGGAGGTC
LOC_Os08g44430
Os.10833.1.S1_at--835--6591Chr08:27823993..27824017 (25 bp)
GATTGAGCTTTTGGTCGGCAAGACT
LOC_Os08g44430
Os.10833.1.S1_at--674--911Chr08:27823866..27823890 (25 bp)
AGGCTGACAGCTTCCACAGGCATGG
LOC_Os08g44430
Os.10833.1.S1_at--929--7051Chr08:27823827..27823851 (25 bp)
GTAAGATGTGGCTTCAGAACCTGAG
LOC_Os08g44430
Os.10833.1.S1_at--134--9131Chr08:27823781..27823805 (25 bp)
TGCTGTTGCGGCGTTGATTCTCTTC
LOC_Os08g44430
Os.10833.1.S1_at--310--6571Chr08:27823766..27823790 (25 bp)
GATTCTCTTCCTCTGGCTGATTATT
LOC_Os08g44430
Os.10833.1.S1_at--196--791Chr08:27823686..27823710 (25 bp)
ATGTGTTTACCGTGTCGTGTGCATA
LOC_Os08g44430
Os.10833.1.S1_at--1131--3031Chr08:27823647..27823671 (25 bp)
AATCCTGCTTTCGATATGCTTCGTG
LOC_Os08g44430
Os.10833.1.S1_at--662--6071Chr08:27823620..27823644 (25 bp)
GAGTTAAATCTCCTTATGGACCTTT
LOC_Os08g44430
Os.10833.1.S1_at--99--851Chr08:27823605..27823629 (25 bp)
ATGGACCTTTATTCCTTGTAGCCTG
LOC_Os08g44430
Os.10833.1.S1_at--599--10811Chr08:27823590..27823614 (25 bp)
TTGTAGCCTGTTCTCATGTTTCATA
LOC_Os08g44430
Target Sequence 
AGTGAAAGCACACCTCACGGAGGTCAAAGGGATTATGATGGACAACATTGAGAAGATATTGGAACGTGGAGAGAAGATTG
AGCTTTTGGTCGGCAAGACTGAAACCTTACAATCACAGGCTGACAGCTTCCACAGGCATGGAAGAGAGCTCAGGCGTAAG
ATGTGGCTTCAGAACCTGAGGTTTAAGTTGATGGTGGGTGGTGCTGTTGCGGCGTTGATTCTCTTCCTCTGGCTGATTAT
TTGCGGGGGCTTCAAGTGCTAGAACATTGAAAGCCTTTTTCTTTGTTTTGCATTCGATGTGTTTACCGTGTCGTGTGCAT
ATATAACGACCAGCAAATCCTGCTTTCGATATGCTTCGTGCAGAGTTAAATCTCCTTATGGACCTTTATTCCTTGTAGCC
TGTTCTCATGTTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis