Browse Element(s) Details


Os.10889.1.S1_at

Description gb:AK068494.1
DB_XREF= gi:32978512
TID=Os.10889.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156M22, full insert sequence.
FL= gb:AK068494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2188011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21840OsAffx.19931.1.S1_at1/112+12979884..12984879retrotransposon protein, putative, unclassified
LOC_Os02g21850OsAffx.12153.1.S1_at10/112+12994061..12995650hypothetical protein
LOC_Os02g21860NANA2+13000352..13000720hypothetical protein
LOC_Os02g21870Os.27492.1.S1_at6/112+13002638..13005812expressed protein
LOC_Os02g21880Os.10889.1.S1_at11/112+13006970..13013145expressed protein
LOC_Os02g21890Os.27961.1.S1_at11/112+13014483..13015520expressed protein
LOC_Os02g21900OsAffx.24378.1.S1_at10/112+13025539..1302657940S ribosomal protein S7, putative
LOC_Os02g21910OsAffx.2713.1.S1_at11/112+13027546..13030044hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10889.1.S1_at--1046--4691Chr02:13012545..13012569 (25 bp)
GCGGCTTCTGTGAAGTTTGCATCAA
LOC_Os02g21880
Os.10889.1.S1_at--870--5192Chr02:13012602..13012626 (25 bp)
GCAATTAAGGCTGCTTCCATCTTCC
LOC_Os02g21880
Os.10889.1.S1_at--628--431Chr02:13012620..13012644 (25 bp)
ATCTTCCCGGAGTCATCAAGCTCAA
LOC_Os02g21880
Os.10889.1.S1_at--535--3211Chr02:13012765..13012789 (25 bp)
CAAGGACTCAGATGCCGATCATGGC
LOC_Os02g21880
Os.10889.1.S1_at--1020--1411Chr02:13012842..13012866 (25 bp)
AGAAATACCATCTGCTTAGCTGCGC
LOC_Os02g21880
Os.10889.1.S1_at--647--4891Chr02:13012855..13012879 (25 bp)
GCTTAGCTGCGCCATCAGAAGTTAA
LOC_Os02g21880
Os.10889.1.S1_at--490--10311Chr02:13012890..13012914 (25 bp)
TTTCGGTTGTTTCTTTGCTCCAGTT
LOC_Os02g21880
Os.10889.1.S1_at--969--3051Chr02:13012953..13012977 (25 bp)
AATCTTTTTGGCTGTATGCATTCCG
LOC_Os02g21880
Os.10889.1.S1_at--153--10111Chr02:13012967..13012991 (25 bp)
TATGCATTCCGGTGTCCAGCTCATG
LOC_Os02g21880
Os.10889.1.S1_at--914--3391Chr02:13012983..13013007 (25 bp)
CAGCTCATGCTAGTCGGTTTGTTAC
LOC_Os02g21880
Os.10889.1.S1_at--236--8771Chr02:13013066..13013090 (25 bp)
TGTATGCTCGCACACAGCGACGAAT
LOC_Os02g21880
Target Sequence 
GCGGCTTCTGTGAAGTTTGCATCAAAATTTGAGAAGAGCAGAAGGGACNAAAGAGCAGCAATTAAGGCTGCTTCCATCTT
CCCGGAGTCATCAAGCTCAACTTCAAAGAACAAGCTGGATCTTGCACTGAAGAGGCGAAATATAAAAGCTGGTGCTGCCT
CAGCGCTGATGGCGAGCAGGGTGAAGCCGTCGTCATGGCAGAGCGCCGGTTCTGGAAGNTCAAGGACTCAGATGCCGATC
ATGGCAACACGTAAGTAGCCACCCCNAGAAGAAAGGCATTTTTCTTCTTCTGGAAGAAGAAATACCATCTGCTTAGCTGC
GCCATCAGAAGTTAAAACCAGCTTGTTTCGGTTGTTTCTTTGCTCCAGTTTCTGTACGAGTATGTGTANTGTGTAGTGTA
TAACTTGAAATCTTTTTGGCTGTATGCATTCCGGTGTCCAGCTCATGCTAGTCGGTTTGTTACNTTATCTTGTACACNTA
AGAATTTAGTAATCTTTGTATATATGTCATGACGTGTCACNCNTGTATGCTCGCACACAGCGACGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis