Browse Element(s) Details


OsAffx.12153.1.S1_at

Description tigr:9630.m02098
TID=OsAffx.12153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2185010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21810Os.52235.1.S1_at11/112+12970235..12972226Cytochrome P450 51, putative, expressed
LOC_Os02g21820OsAffx.2712.1.S1_at10/112+12973544..12974522hypothetical protein
LOC_Os02g21830NANA2+12978144..12978401hypothetical protein
LOC_Os02g21840OsAffx.19931.1.S1_at1/112+12979884..12984879retrotransposon protein, putative, unclassified
LOC_Os02g21850OsAffx.12153.1.S1_at10/112+12994061..12995650hypothetical protein
LOC_Os02g21860NANA2+13000352..13000720hypothetical protein
LOC_Os02g21870Os.27492.1.S1_at6/112+13002638..13005812expressed protein
LOC_Os02g21880Os.10889.1.S1_at11/112+13006970..13013145expressed protein
LOC_Os02g21890Os.27961.1.S1_at11/112+13014483..13015520expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12153.1.S1_at--7--9811Chr02:12994105..12994129 (25 bp)
TAACCTCGGACTATATCCACTCGAA
LOC_Os02g21850
OsAffx.12153.1.S1_at--570--8571Chr02:12994149..12994173 (25 bp)
TGGATTCTCTCAAGTCCTCGGGATC
LOC_Os02g21850
OsAffx.12153.1.S1_at--1020--6391Chr02:12994170..12994194 (25 bp)
GATCGGACTTAGACCGTGATGTCAA
LOC_Os02g21850
OsAffx.12153.1.S1_at--1109--2791Chr02:12994251..12994275 (25 bp)
AAGATGGGCCATTACTCATTTCCCC
LOC_Os02g21850
OsAffx.12153.1.S1_at--463--7611Chr02:12994280..12994304 (25 bp)
GGGAATTCACCCATTAGAGGACGAG
LOC_Os02g21850
OsAffx.12153.1.S1_at--612--6171Chr02:12994302..12994326 (25 bp)
GAGGATGGTTGCAATTGGTTCTCCA
LOC_Os02g21850
OsAffx.12153.1.S1_at--979--8211Chr02:12994341..12994365 (25 bp)
GGCAAAAGCAAGTACCCATTGGGTT
LOC_Os02g21850
OsAffx.12153.1.S1_at--360--11Chr02:12994395..12994419 (25 bp)
ATTCCCCGTGGAGGCCAAATCCAAT
LOC_Os02g21850
OsAffx.12153.1.S1_at--499--9831NONE
TAAAAATGTTTCTAGCCCACCACTT
NONE
OsAffx.12153.1.S1_at--829--2151Chr02:12995266..12995290 (25 bp)
ACAGCCGCTGCGAGAATAATCAAGA
LOC_Os02g21850
OsAffx.12153.1.S1_at--658--8151Chr02:12995304..12995328 (25 bp)
GGAAATGTCACAACCTAGCTATAAG
LOC_Os02g21850
Target Sequence 
TAACCTCGGACTATATCCACTCGAACCATCCATTCTCCACAACCTGGATTCTCTCAAGTCCTCGGGATCGGACTTAGACC
GTGATGTCAACGTAATTGAGAAAACGGAGCTACCTACCCGTACAAACAAAAGGGCAACTCTTGAGGAAGATGGGCCATTA
CTCATTTCCCCGAGGGGGAATTCACCCATTAGAGGACGAGGATGGTTGCAATTGGTTCTCCATGGGGAATCAAACTGGCA
AAAGCAAGTACCCATTGGGTTTGGCGAGGGCAGCTCCATCCCCCATCCCCATTCCCCGTGGAGGCCAAATCCAATAAAAA
TGTTTCTAGCCCACCACTTGACAGCCGCTGCGAGAATAATCAAGAATAATATGCGAAGGGAAATGTCACAACCTAGCTAT
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis