Browse Element(s) Details


Os.27492.1.S1_at

Description gb:AK121180.1
DB_XREF= gi:37990803
TID=Os.27492.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAb0015J03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083M11, full insert sequence.
FL= gb:AK072061.1 gb:AK070063.1 gb:AK121180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g218706/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21830NANA2+12978144..12978401hypothetical protein
LOC_Os02g21840OsAffx.19931.1.S1_at1/112+12979884..12984879retrotransposon protein, putative, unclassified
LOC_Os02g21850OsAffx.12153.1.S1_at10/112+12994061..12995650hypothetical protein
LOC_Os02g21860NANA2+13000352..13000720hypothetical protein
LOC_Os02g21870Os.27492.1.S1_at6/112+13002638..13005812expressed protein
LOC_Os02g21880Os.10889.1.S1_at11/112+13006970..13013145expressed protein
LOC_Os02g21890Os.27961.1.S1_at11/112+13014483..13015520expressed protein
LOC_Os02g21900OsAffx.24378.1.S1_at10/112+13025539..1302657940S ribosomal protein S7, putative
LOC_Os02g21910OsAffx.2713.1.S1_at11/112+13027546..13030044hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27492.1.S1_at--489--6052Chr10:4439470..4439494 (25 bp)
GAGATTTTCATGTTTGGGTTTGCAA
NONE
Os.27492.1.S1_at--470--9613Chr10:4439477..4439501 (25 bp)
TCATGTTTGGGTTTGCAACTCCTAG
NONE
Os.27492.1.S1_at--301--6873Chr10:4439481..4439505 (25 bp)
GTTTGGGTTTGCAACTCCTAGATTT
NONE
Os.27492.1.S1_at--75--7693Chr10:4439485..4439509 (25 bp)
GGGTTTGCAACTCCTAGATTTTGTG
NONE
Os.27492.1.S1_at--256--5153Chr10:4439491..4439515 (25 bp)
GCAACTCCTAGATTTTGTGGTGGTA
NONE
Os.27492.1.S1_at--100--1993Chr10:4439494..4439518 (25 bp)
ACTCCTAGATTTTGTGGTGGTATGT
NONE
Os.27492.1.S1_at--1005--10711Chr10:4439561..4439585 (25 bp)
TTGCTAACTTGCTATATGTTTCTGC
NONE
Os.27492.1.S1_at--313--2071Chr10:4439567..4439591 (25 bp)
ACTTGCTATATGTTTCTGCATGGAC
NONE
Os.27492.1.S1_at--928--4871Chr10:4439571..4439595 (25 bp)
GCTATATGTTTCTGCATGGACAGAA
NONE
Os.27492.1.S1_at--859--3831Chr10:4439582..4439606 (25 bp)
CTGCATGGACAGAAAAAAGACCTTG
NONE
Os.27492.1.S1_at--462--5831Chr10:4439600..4439624 (25 bp)
GACCTTGGGTAGTTTTATTCAATAT
NONE
Target Sequence 
GAGATTTTCATGTTTGGGTTTGCAACTCCTAGATTTTGTGGTGGTATGTNATGAAAATAGCCGCTGANCAACTGAAATGA
AAATATGCCTGTTGCTAACTTGCTATATGTTTCTGCATGGACAGAAAAAAGACCTTGGGTAGTTTTATTCAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis