Browse Element(s) Details


OsAffx.24378.1.S1_at

Description tigr:9630.m02103
TID=OsAffx.24378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2190010/1140S ribosomal protein S7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21860NANA2+13000352..13000720hypothetical protein
LOC_Os02g21870Os.27492.1.S1_at6/112+13002638..13005812expressed protein
LOC_Os02g21880Os.10889.1.S1_at11/112+13006970..13013145expressed protein
LOC_Os02g21890Os.27961.1.S1_at11/112+13014483..13015520expressed protein
LOC_Os02g21900OsAffx.24378.1.S1_at10/112+13025539..1302657940S ribosomal protein S7, putative
LOC_Os02g21910OsAffx.2713.1.S1_at11/112+13027546..13030044hypothetical protein
LOC_Os02g21920Os.17019.1.A1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_s_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21930OsAffx.2714.1.S1_at11/112+13042344..13042744hypothetical protein
LOC_Os02g21950OsAffx.31869.4.S1_at5/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.4.S1_x_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.5.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24378.1.S1_at--630--6591Chr02:13026406..13026544 (25 bp)
GATTGATCTTGTGGTAGTGATCCAT
LOC_Os02g21900
OsAffx.24378.1.S1_at--608--9231Chr02:13026386..13026410 (25 bp)
TCCATGTGTTGTACCATCTGTGCAA
LOC_Os02g21900
OsAffx.24378.1.S1_at--817--8751Chr02:13026377..13026401 (25 bp)
TGTACCATCTGTGCAAGGCATTCAA
LOC_Os02g21900
OsAffx.24378.1.S1_at--580--4331Chr02:13026346..13026370 (25 bp)
CCATGTTAGGCTTGTCAAGGAGCTT
LOC_Os02g21900
OsAffx.24378.1.S1_at--1015--1211NONE
AGTTCAGTGGCAAGGATGTGGTCTT
NONE
OsAffx.24378.1.S1_at--57--6271Chr02:13025676..13025700 (25 bp)
GATGTGGTCTTTGATGCAACAAGGA
LOC_Os02g21900
OsAffx.24378.1.S1_at--682--10811Chr02:13025648..13025672 (25 bp)
TTGTGAGGCCTCTCAATAAGGGTTC
LOC_Os02g21900
OsAffx.24378.1.S1_at--872--351Chr02:13025633..13025657 (25 bp)
ATAAGGGTTCAGCTGTTCATCATCC
LOC_Os02g21900
OsAffx.24378.1.S1_at--130--4751Chr02:13025622..13025646 (25 bp)
GCTGTTCATCATCCTCGTACAAGAA
LOC_Os02g21900
OsAffx.24378.1.S1_at--354--9611Chr02:13025614..13025638 (25 bp)
TCATCCTCGTACAAGAACTTTGATT
LOC_Os02g21900
OsAffx.24378.1.S1_at--142--2531Chr02:13025599..13025623 (25 bp)
AACTTTGATTACTGTTCATGATGGA
LOC_Os02g21900
Target Sequence 
GATTGATCTTGTGGTAGTGATCCATGTGTTGTACCATCTGTGCAAGGCATTCAAGAAAATCCATGTTAGGCTTGTCAAGG
AGCTTGAGAAGAAGTTCAGTGGCAAGGATGTGGTCTTTGATGCAACAAGGAGGATTGTGAGGCCTCTCAATAAGGGTTCA
GCTGTTCATCATCCTCGTACAAGAACTTTGATTACTGTTCATGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis