Browse Element(s) Details


OsAffx.2714.1.S1_at

Description tigr:9630.m02106
TID=OsAffx.2714.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2193011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21900OsAffx.24378.1.S1_at10/112+13025539..1302657940S ribosomal protein S7, putative
LOC_Os02g21910OsAffx.2713.1.S1_at11/112+13027546..13030044hypothetical protein
LOC_Os02g21920Os.17019.1.A1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_s_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21930OsAffx.2714.1.S1_at11/112+13042344..13042744hypothetical protein
LOC_Os02g21950OsAffx.31869.4.S1_at5/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.4.S1_x_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.5.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21960NANA2+13056046..13057224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21970Os.11446.1.S1_at10/112+13059121..1306384826S protease regulatory subunit 6B homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2714.1.S1_at--251--4291Chr02:13042385..13042409 (25 bp)
CCTCGCACACGTCGTGGTCAAGGAA
LOC_Os02g21930
OsAffx.2714.1.S1_at--612--9351Chr02:13042387..13042411 (25 bp)
TCGCACACGTCGTGGTCAAGGAAGG
LOC_Os02g21930
OsAffx.2714.1.S1_at--957--9891Chr02:13042416..13042440 (25 bp)
TACTCACCGTCGTGCTGGCGATGTT
LOC_Os02g21930
OsAffx.2714.1.S1_at--167--3371Chr02:13042420..13042444 (25 bp)
CACCGTCGTGCTGGCGATGTTGCGC
LOC_Os02g21930
OsAffx.2714.1.S1_at--121--8811Chr02:13042437..13042461 (25 bp)
TGTTGCGCGAAGGAGCATGACGTTC
LOC_Os02g21930
OsAffx.2714.1.S1_at--335--10711Chr02:13042439..13042463 (25 bp)
TTGCGCGAAGGAGCATGACGTTCAT
LOC_Os02g21930
OsAffx.2714.1.S1_at--662--5911Chr02:13042449..13042473 (25 bp)
GAGCATGACGTTCATGGCTCCTACC
LOC_Os02g21930
OsAffx.2714.1.S1_at--152--8951Chr02:13042454..13042478 (25 bp)
TGACGTTCATGGCTCCTACCATCAT
LOC_Os02g21930
OsAffx.2714.1.S1_at--574--1891Chr02:13042456..13042480 (25 bp)
ACGTTCATGGCTCCTACCATCATCT
LOC_Os02g21930
OsAffx.2714.1.S1_at--27--1591Chr02:13042483..13042507 (25 bp)
AGCTCCTCTTTTCGTCGTCCGGACG
LOC_Os02g21930
OsAffx.2714.1.S1_at--824--8091Chr02:13042503..13042527 (25 bp)
GGACGCCCATTCGTCTCGCTGGTCG
LOC_Os02g21930
Target Sequence 
CCTCGCACACGTCGTGGTCAAGGAAGGGGCCTACTCACCGTCGTGCTGGCGATGTTGCGCGAAGGAGCATGACGTTCATG
GCTCCTACCATCATCTCCAGCTCCTCTTTTCGTCGTCCGGACGCCCATTCGTCTCGCTGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis