Browse Element(s) Details


Os.11446.1.S1_at

Description gb:AK059237.1
DB_XREF= gi:32969255
TID=Os.11446.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPT3 mRNA for 26S proteasome regulatory particle triple-A ATPase subunit3, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F02, full insert sequence.
FL= gb:AK059237.1 gb:AK071476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2197010/1126S protease regulatory subunit 6B homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21920Os.17019.1.A1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_s_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21930OsAffx.2714.1.S1_at11/112+13042344..13042744hypothetical protein
LOC_Os02g21950OsAffx.31869.4.S1_at5/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.4.S1_x_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.5.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21960NANA2+13056046..13057224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21970Os.11446.1.S1_at10/112+13059121..1306384826S protease regulatory subunit 6B homolog, putative, expressed
LOC_Os02g21980NANA2+13068447..13075373retrotransposon, putative, centromere-specific
LOC_Os02g21990NANA2+13076893..13077966retrotransposon, putative, centromere-specific
LOC_Os02g22000OsAffx.24379.1.S1_at9/112+13081998..13085777phosphoglycerate mutase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11446.1.S1_at--714--3831Chr02:13061453..13061477 (25 bp)
CTGCTCTGTTACGTCCAGGTAGATT
LOC_Os02g21970
Os.11446.1.S1_at--50--951Chr02:13061482..13061506 (25 bp)
AGGAAAATCGAGTTCCCTCTTCCAG
LOC_Os02g21970
Os.11446.1.S1_at--879--6191Chr02:13061520..13061861 (25 bp)
GAGGCTTGTTTTCCAAGTCTGTACT
LOC_Os02g21970
Os.11446.1.S1_at--578--5351Chr02:13062561..13062585 (25 bp)
GAAGATTATGTTTCCAGACCAGATA
LOC_Os02g21970
Os.11446.1.S1_at--730--4771NONE
GCTGCTGATATTGCTGCTATCTGTC
NONE
Os.11446.1.S1_at--274--2251Chr02:13063431..13063455 (25 bp)
AAATCGGTATGTTATCCTCCCCAAG
LOC_Os02g21970
Os.11446.1.S1_at--1128--1431Chr02:13063487..13063511 (25 bp)
AGAAGCCTGAGACTGACTTTGACTT
LOC_Os02g21970
Os.11446.1.S1_at--916--711Chr02:13063581..13063605 (25 bp)
ATGATTTCCTGGATAGTCGCCTCAG
LOC_Os02g21970
Os.11446.1.S1_at--957--10111Chr02:13063618..13063642 (25 bp)
TATGTACCTAGAGGCTCGTCAGTGC
LOC_Os02g21970
Os.11446.1.S1_at--713--7271Chr02:13063639..13063663 (25 bp)
GTGCCCCAATCTGTTTTATCAGGTC
LOC_Os02g21970
Os.11446.1.S1_at--541--6851Chr02:13063706..13063730 (25 bp)
GTTTGCACGGTCAATCCTTTTGATG
LOC_Os02g21970
Target Sequence 
CTGCTCTGTTACGTCCAGGTAGATTGGACAGGAAAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTC
CAAGTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGC
TGCTGATATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGGTATGTTATCCTCCCCAAGGACT
TCGAGAAGGGTTACCGAACCAATGTCAAGAAGCCTGAGACTGACTTTGACTTCTACAAATGAGGCAACATATTGTTGAAC
TGCATGCTTGTTCCCCTCCGGAGCTATCATTAACATTAAAGATGATTTCCTGGATAGTCGCCTCAGCGATATTTAGTTTA
TGTACCTAGAGGCTCGTCAGTGCCCCAATCTGTTTTATCAGGTCTGTAATTTCAATTTGTGCTTGTACTTGCTGGAAAAT
AGAAAGGTTTGCACGGTCAATCCTTTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis