Browse Element(s) Details


OsAffx.2712.1.S1_at

Description tigr:9630.m02095
TID=OsAffx.2712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2182010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21790OsAffx.10496.1.S1_at4/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.20628.1.S1_at1/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21800OsAffx.2711.1.S1_at11/112+12954659..12954946hypothetical protein
LOC_Os02g21800OsAffx.2711.1.S1_x_at11/112+12954659..12954946hypothetical protein
LOC_Os02g21810Os.52235.1.S1_at11/112+12970235..12972226Cytochrome P450 51, putative, expressed
LOC_Os02g21820OsAffx.2712.1.S1_at10/112+12973544..12974522hypothetical protein
LOC_Os02g21830NANA2+12978144..12978401hypothetical protein
LOC_Os02g21840OsAffx.19931.1.S1_at1/112+12979884..12984879retrotransposon protein, putative, unclassified
LOC_Os02g21850OsAffx.12153.1.S1_at10/112+12994061..12995650hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2712.1.S1_at--867--2411Chr02:12974465..12974489 (25 bp)
AAAAACCATGGCCATCTACTGCTGC
LOC_Os02g21820
OsAffx.2712.1.S1_at--766--9911Chr02:12974449..12974473 (25 bp)
TACTGCTGCTACACGGTCTGAAAGG
LOC_Os02g21820
OsAffx.2712.1.S1_at--246--4851Chr02:12974442..12974466 (25 bp)
GCTACACGGTCTGAAAGGCGACGAA
LOC_Os02g21820
OsAffx.2712.1.S1_at--515--891Chr02:12974427..12974451 (25 bp)
AGGCGACGAAGAACTCGTTCGTGAA
LOC_Os02g21820
OsAffx.2712.1.S1_at--8--2551Chr02:12974416..12974440 (25 bp)
AACTCGTTCGTGAAGGGCTCACCAG
LOC_Os02g21820
OsAffx.2712.1.S1_at--121--9011Chr02:12974406..12974430 (25 bp)
TGAAGGGCTCACCAGCCACCTTGAA
LOC_Os02g21820
OsAffx.2712.1.S1_at--1073--1731Chr02:12974389..12974413 (25 bp)
ACCTTGAACTAGTGCAGCTCACCGA
LOC_Os02g21820
OsAffx.2712.1.S1_at--579--1571Chr02:12974374..12974398 (25 bp)
AGCTCACCGAGCATGCTAGCGTACA
LOC_Os02g21820
OsAffx.2712.1.S1_at--760--6931NONE
GTAGTCCTCGATGAGGACAGTCCTA
NONE
OsAffx.2712.1.S1_at--371--6191Chr02:12973615..12973638 (24 bp)
GAGGACAGTCCTAATGTCAAAATTA
LOC_Os02g21820
OsAffx.2712.1.S1_at--408--8551Chr02:12973589..12973613 (25 bp)
TAGTATTACTACAGACCCCCTAAAT
LOC_Os02g21820
Target Sequence 
AAAAACCATGGCCATCTACTGCTGCTACACGGTCTGAAAGGCGACGAAGAACTCGTTCGTGAAGGGCTCACCAGCCACCT
TGAACTAGTGCAGCTCACCGAGCATGCTAGCGTACAGCTCCGACGCTTCGGCGTGGTGGTGGTAGCGGCGCTGGAGCACG
AGGTGGAGGATGAGCTTGGAGTCATGGGCGCGGTGGAGGGACTTGTCGAGCGCGGTGATGAAGTTGAGGGTGTGGAGGGT
GCCATCGAAGTAGTCCTCGATGAGGACAGTCCTAATGTCAAAATTAGTAGTATTACTACAGACCCCCTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis