Browse Element(s) Details


OsAffx.2711.1.S1_at

Description tigr:9630.m02093
TID=OsAffx.2711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2180011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21760OsAffx.2710.1.S1_at10/112+12936339..12936895hypothetical protein
LOC_Os02g21770NANA2+12940359..12940869hypothetical protein
LOC_Os02g21780OsAffx.1646.1.S1_x_at1/112+12944745..12946019retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.10496.1.S1_at4/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.20628.1.S1_at1/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21800OsAffx.2711.1.S1_at11/112+12954659..12954946hypothetical protein
LOC_Os02g21800OsAffx.2711.1.S1_x_at11/112+12954659..12954946hypothetical protein
LOC_Os02g21810Os.52235.1.S1_at11/112+12970235..12972226Cytochrome P450 51, putative, expressed
LOC_Os02g21820OsAffx.2712.1.S1_at10/112+12973544..12974522hypothetical protein
LOC_Os02g21830NANA2+12978144..12978401hypothetical protein
LOC_Os02g21840OsAffx.19931.1.S1_at1/112+12979884..12984879retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2711.1.S1_at--754--8691Chr02:12954706..12954730 (25 bp)
TGTGCCCGTTGGGCCTCAAATCAAC
LOC_Os02g21800
OsAffx.2711.1.S1_at--977--4391Chr02:12954802..12954826 (25 bp)
GCCAAACAAAGATGCCAGTGCACAC
LOC_Os02g21800
OsAffx.2711.1.S1_at--650--2331Chr02:12954809..12954833 (25 bp)
AAAGATGCCAGTGCACACTTGCAAC
LOC_Os02g21800
OsAffx.2711.1.S1_at--1125--571Chr02:12954813..12954837 (25 bp)
ATGCCAGTGCACACTTGCAACAGTT
LOC_Os02g21800
OsAffx.2711.1.S1_at--329--7351Chr02:12954819..12954843 (25 bp)
GTGCACACTTGCAACAGTTCCAAGA
LOC_Os02g21800
OsAffx.2711.1.S1_at--469--6691Chr02:12954835..12954859 (25 bp)
GTTCCAAGAGATCCGCAGCACATAT
LOC_Os02g21800
OsAffx.2711.1.S1_at--145--2791Chr02:12954840..12954864 (25 bp)
AAGAGATCCGCAGCACATATACAGT
LOC_Os02g21800
OsAffx.2711.1.S1_at--1016--6371Chr02:12954844..12954868 (25 bp)
GATCCGCAGCACATATACAGTGAAA
LOC_Os02g21800
OsAffx.2711.1.S1_at--409--9871Chr02:12954859..12954883 (25 bp)
TACAGTGAAAGGTGTTAGCCCAGAT
LOC_Os02g21800
OsAffx.2711.1.S1_at--1067--8951Chr02:12954864..12954888 (25 bp)
TGAAAGGTGTTAGCCCAGATGCCGT
LOC_Os02g21800
OsAffx.2711.1.S1_at--157--1051Chr02:12954868..12954892 (25 bp)
AGGTGTTAGCCCAGATGCCGTCAGG
LOC_Os02g21800
Target Sequence 
TGTGCCCGTTGGGCCTCAAATCAACTTAGGAGACACGGACTTCGATCTAAAGTCTAGCCTTATCACCATGGCGCAGGCTA
GCCTGTTCTGTGGCAAGCCAAACAAAGATGCCAGTGCACACTTGCAACAGTTCCAAGAGATCCGCAGCACATATACAGTG
AAAGGTGTTAGCCCAGATGCCGTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis