Browse Element(s) Details


Os.52235.1.S1_at

Description gb:AK065792.1
DB_XREF= gi:32975810
TID=Os.52235.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013040I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013040I18, full insert sequence.
FL= gb:AK065792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2181011/11Cytochrome P450 51, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21780OsAffx.1646.1.S1_x_at1/112+12944745..12946019retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.10496.1.S1_at4/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.20628.1.S1_at1/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21800OsAffx.2711.1.S1_at11/112+12954659..12954946hypothetical protein
LOC_Os02g21800OsAffx.2711.1.S1_x_at11/112+12954659..12954946hypothetical protein
LOC_Os02g21810Os.52235.1.S1_at11/112+12970235..12972226Cytochrome P450 51, putative, expressed
LOC_Os02g21820OsAffx.2712.1.S1_at10/112+12973544..12974522hypothetical protein
LOC_Os02g21830NANA2+12978144..12978401hypothetical protein
LOC_Os02g21840OsAffx.19931.1.S1_at1/112+12979884..12984879retrotransposon protein, putative, unclassified
LOC_Os02g21850OsAffx.12153.1.S1_at10/112+12994061..12995650hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0008398molecular_functionsterol 14-demethylase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52235.1.S1_at--318--7411Chr02:12971684..12971708 (25 bp)
GTGATCTTGCCTACTTGTCGTTCGG
LOC_Os02g21810
Os.52235.1.S1_at--1025--9451Chr02:12971705..12971729 (25 bp)
TCGGCGCCGGGAAGCATGCATGCAT
LOC_Os02g21810
Os.52235.1.S1_at--126--2331Chr02:12971758..12971782 (25 bp)
AAAGTGATTTTGAGCCACCTGGTGA
LOC_Os02g21810
Os.52235.1.S1_at--1031--1691Chr02:12971770..12971794 (25 bp)
AGCCACCTGGTGAGCAATTTCGAGC
LOC_Os02g21810
Os.52235.1.S1_at--291--1751Chr02:12971808..12971832 (25 bp)
ACCTTTCCCCGAAACTGAGGACATG
LOC_Os02g21810
Os.52235.1.S1_at--295--8891Chr02:12971823..12971847 (25 bp)
TGAGGACATGCTTTCCATGAGGCCC
LOC_Os02g21810
Os.52235.1.S1_at--1055--1311Chr02:12971873..12971897 (25 bp)
AGAGACGGACGCTTTCCTGAAATAT
LOC_Os02g21810
Os.52235.1.S1_at--115--2291Chr02:12972055..12972079 (25 bp)
AAATGCGCTGTTGTCCTGTATATTG
LOC_Os02g21810
Os.52235.1.S1_at--62--191Chr02:12972098..12972122 (25 bp)
ATTTAGTCATTCCTCTTGCAATTCG
LOC_Os02g21810
Os.52235.1.S1_at--222--91Chr02:12972106..12972130 (25 bp)
ATTCCTCTTGCAATTCGCTCAAATA
LOC_Os02g21810
Os.52235.1.S1_at--1110--731Chr02:12972161..12972185 (25 bp)
ATGTTTATCGCGCTATGTCAGGCCT
LOC_Os02g21810
Target Sequence 
GTGATCTTGCCTACTTGTCGTTCGGCGCCGGGAAGCATGCATGCATGGGCGAGGGCTACGCCTACCAGCAGATAAAAGTG
ATTTTGAGCCACCTGGTGAGCAATTTCGAGCTCAAATTAGAATCACCTTTCCCCGAAACTGAGGACATGCTTTCCATGAG
GCCCAAAGGTAAAGCAATTGTCAGCTATAAGAGACGGACGCTTTCCTGAAATATGCAGGAACGTTGAAGAATGTGGGCAG
GTTATTGATAGGAACACATAAATCCATACGAAATTAAATGCCTAAATCAAAAGTTAAAATATAAATTATTTGTCTTTAAA
GATATTTCGAGATTGGGAATGTTAGAATTTTAATTTTTATGGCTTTAAAATAAATGCGCTGTTGTCCTGTATATTGTACG
GTGGATGTAATTTAATTTAGTCATTCCTCTTGCAATTCGCTCAAATAATTTACGCAGTTTGATAAAGTACAAGTGTGATG
TTTATCGCGCTATGTCAGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis