Browse Element(s) Details


Os.10917.1.S1_at

Description gb:AK100782.1
DB_XREF= gi:32985991
TID=Os.10917.1
CNT=112
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.10917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120J15, full insert sequence.
FL= gb:AK059749.1 gb:AK060137.1 gb:AK100782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5015411/11Translocon-associated protein alpha subunit precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50090NANA6+30345016..30345330expressed protein
LOC_Os06g50100Os.53323.1.S1_s_at11/116+30345862..30349036Protein kinase domain containing protein, expressed
LOC_Os06g50110Os.6175.1.S1_at11/116+30351996..30356040expressed protein
LOC_Os06g50120Os.47383.1.S1_at10/116+30356703..30360200Novel plant SNARE 11, putative, expressed
LOC_Os06g50130Os.17198.1.S1_at11/116+30361752..30362812expressed protein
LOC_Os06g50140Os.50481.1.S1_at11/116+30363072..30365664Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g50154Os.10917.1.S1_at11/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154Os.22946.1.S2_at11/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154Os.22946.1.S1_at10/116+30366404..30373549Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50170Os.16975.1.S1_at11/116+30375356..30380323brain and reproductive organ-expressed, putative, expressed
LOC_Os06g50180Os.50494.1.A1_at10/116+30382143..30385892Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os06g50190Os.2235.3.S1_x_at11/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50190Os.52007.1.S1_at1/116+30386919..30393175retrotransposon protein, putative, unclassified
LOC_Os06g50200NANA6+30396269..30399164retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10917.1.S1_at--288--6651Chr06:30372828..30372852 (25 bp)
GTTGAGTCTGTGTTCCTTATTACCC
LOC_Os06g50154
Os.10917.1.S1_at--267--10371Chr06:30372844..30372868 (25 bp)
TTATTACCCTTGGAGTTGCCCTTCT
LOC_Os06g50154
Os.10917.1.S1_at--795--8591Chr06:30372869..30372893 (25 bp)
TGGTCTCTTCGGATTGTGGGCATAT
LOC_Os06g50154
Os.10917.1.S1_at--262--8171Chr06:30373040..30373064 (25 bp)
GGAACTACTGATGCCAACATGGATG
LOC_Os06g50154
Os.10917.1.S1_at--1095--6211Chr06:30373214..30373238 (25 bp)
GAGGCCCTTGAACTCTAGTTAATCA
LOC_Os06g50154
Os.10917.1.S1_at--411--6131Chr06:30373265..30373289 (25 bp)
GAGGGTAGCCCTTCACAAGTAACTT
LOC_Os06g50154
Os.10917.1.S1_at--824--9831Chr06:30373323..30373347 (25 bp)
TAAACCGTAGTTTCGTGGCTGCTGC
LOC_Os06g50154
Os.10917.1.S1_at--1116--7531Chr06:30373337..30373361 (25 bp)
GTGGCTGCTGCACATGTTTGTTGAC
LOC_Os06g50154
Os.10917.1.S1_at--440--6651Chr06:30373356..30373380 (25 bp)
GTTGACACCAAATTTCGACCTTGTT
LOC_Os06g50154
Os.10917.1.S1_at--702--9351Chr06:30373370..30373394 (25 bp)
TCGACCTTGTTGTGTACTTTTACAT
LOC_Os06g50154
Os.10917.1.S1_at--85--451Chr06:30373456..30373480 (25 bp)
ATCTTATTTGATCTGTGACATGCCG
LOC_Os06g50154
Target Sequence 
GTTGAGTCTGTGTTCCTTATTACCCTTGGAGTTGCCCTTCTTGGTCTCTTCGGATTGTGGGCATATGGTCAAGTACAACA
GCTCTCAAAGAAAACAAAGAAGGCCCCCAAGGTGGAACTGGGAACTGGAACTACTGATGCCAACATGGATGAGTGGCTGG
AGGGCACTGCATTTGCACAGGGAAGCAAATCCAAGAAGAAGAAATAGATTGGAGGCCCTTGAACTCTAGTTAATCATTTT
CAGGATCTAGAATGAGACAGTTGAGGGTAGCCCTTCACAAGTAACTTTTGCAGACGATAGATGAGAAAATGGAGGTGTTT
TAAACCGTAGTTTCGTGGCTGCTGCACATGTTTGTTGACACCAAATTTCGACCTTGTTGTGTACTTTTACATGAAAGTTT
TTTCTTTGAAAAACACAGTTTTGTTCAAGGTATATGCTATGGATGTGATCTCTGATCTTATTTGATCTGTGACATGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis