Browse Element(s) Details

Os.10989.2.S1_at

Description

gb:AK073850.1
DB_XREF= gi:32983873
TID=Os.10989.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073F11, full insert sequence.
FL= gb:AK073850.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50890	11/11	RNA recognition motif family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50830	Os.55915.1.S1_at	11/11	6	+	30753647..30757414	bZIP transcription factor family protein, expressed
LOC_Os06g50840	Os.50011.1.S1_at	11/11	6	+	30761492..30767203	zinc finger family protein, putative, expressed
LOC_Os06g50850	OsAffx.16013.1.S1_at	11/11	6	+	30767269..30769458	expressed protein
LOC_Os06g50860	Os.9925.1.S1_at	10/11	6	+	30769704..30772815	expressed protein
LOC_Os06g50870	Os.53776.1.S1_at	10/11	6	+	30773203..30775617	DNL zinc finger family protein, expressed
LOC_Os06g50880	Os.18869.1.S1_at	11/11	6	+	30775910..30778654	transducin family protein, putative, expressed
LOC_Os06g50890	Os.10989.2.S1_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50890	Os.10989.1.S1_a_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50910	Os.48137.1.A1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.49175.1.S1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.24117.1.A1_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	OsAffx.31869.4.S1_x_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50900	Os.11409.1.S1_at	11/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_at	1/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_x_at	1/11	6	+	30798420..30800415	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0000398	biological_process	nuclear mRNA splicing, via spliceosome
GO:0016607	cellular_component	nuclear speck
GO:0030529	cellular_component	ribonucleoprotein complex
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10989.2.S1_at--697--691	1	Chr06:30783186..30783210 (25 bp)	GTATGTCTTATTTTGGCACCTTTAT	LOC_Os06g50890
Os.10989.2.S1_at--636--825	1	Chr06:30783200..30783224 (25 bp)	GGCACCTTTATTGGAGTGTTTGAAA	LOC_Os06g50890
Os.10989.2.S1_at--339--503	1	Chr06:30783242..30783266 (25 bp)	GCAGTAGCTGCTACGTGGCTATTAT	LOC_Os06g50890
Os.10989.2.S1_at--588--829	1	Chr06:30783258..30783282 (25 bp)	GGCTATTATTTGACATGGGCCATAA	LOC_Os06g50890
Os.10989.2.S1_at--917--79	1	Chr06:30783272..30783296 (25 bp)	ATGGGCCATAATGCGCATCCTTGAA	LOC_Os06g50890
Os.10989.2.S1_at--1134--21	1	Chr06:30783311..30783335 (25 bp)	ATATTCACCTGGAGGACAGCGCGGT	LOC_Os06g50890
Os.10989.2.S1_at--533--813	1	Chr06:30783324..30783348 (25 bp)	GGACAGCGCGGTAAGTTTGATGTAA	LOC_Os06g50890
Os.10989.2.S1_at--142--231	1	Chr06:30783398..30783422 (25 bp)	AAAGGCTTTGATGTGCCGGTCCTGC	LOC_Os06g50890
Os.10989.2.S1_at--590--167	1	Chr06:30783423..30783447 (25 bp)	AGCCCCTGCATCATCATTGTGTCTG	LOC_Os06g50890
Os.10989.2.S1_at--552--3	1	Chr06:30783438..30783462 (25 bp)	ATTGTGTCTGATGCCATGGAATGGA	LOC_Os06g50890
Os.10989.2.S1_at--85--501	1	Chr06:30783504..30783528 (25 bp)	GCATGTGACGGCGTTTGTGGTTTTT	LOC_Os06g50890

Target Sequence

GTATGTCTTATTTTGGCACCTTTATTGGAGTGTTTGAAATCGTGGGGGGCAGAGTGGCAGTAGCTGCTACGTGGCTATTA
TTTGACATGGGCCATAATGCGCATCCTTGAAAGGTGAAAGCTGGAATATTCACCTGGAGGACAGCGCGGTAAGTTTGATG
TAAGTAAAAGTGCGGTGGTGAAAAAACGTGGGTGTGTACATATGAGAAGACAAAAGGCTTTGATGTGCCGGTCCTGCAGC
CCCTGCATCATCATTGTGTCTGATGCCATGGAATGGAATCCAGCCAGAGAAGTGAGATTGCAACTTTGCAAGATCGATGC
ATGTGACGGCGTTTGTGGTTTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis