Browse Element(s) Details


Os.11061.1.S1_at

Description gb:CB635416
DB_XREF= gi:29630407
DB_XREF=OSIIEb15M16.r
CLONE=OSIIEb15M16
TID=Os.11061.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.11061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNAa0029P06.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0521011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05200Os.46847.1.S1_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05200Os.46847.2.S1_x_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05210Os.11061.1.S1_at11/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05210Os.46074.1.A1_at6/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05220Os.31936.1.S1_at11/1110+2542990..2548420tRNA-guanine transglycosylases, various specificities family protein, expressed
LOC_Os10g05230Os.10464.1.S1_at11/1110+2551663..2556201Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11061.1.S1_at--326--9871Chr10:2540291..2540315 (25 bp)
TACAGGATGGGTGCTGCGCAAGACC
LOC_Os10g05210
Os.11061.1.S1_at--1158--7291Chr10:2540301..2540325 (25 bp)
GTGCTGCGCAAGACCATTGAGTTGG
LOC_Os10g05210
Os.11061.1.S1_at--493--31Chr10:2540316..2540340 (25 bp)
ATTGAGTTGGGTGCAGTCCTTCCGC
LOC_Os10g05210
Os.11061.1.S1_at--529--2851Chr10:2540344..2540368 (25 bp)
AAGTGCCCTCTGTACCGTTGACGGA
LOC_Os10g05210
Os.11061.1.S1_at--970--251Chr10:2540368..2540392 (25 bp)
ATAGTCATTTGGTTAGAAGGCCTCC
LOC_Os10g05210
Os.11061.1.S1_at--752--5291Chr10:2540383..2540407 (25 bp)
GAAGGCCTCCAGTCAGGATATTAGG
LOC_Os10g05210
Os.11061.1.S1_at--887--1931Chr10:2540442..2540466 (25 bp)
ACGGCAGTTGGTGTCTTTGCTGTCC
LOC_Os10g05210
Os.11061.1.S1_at--459--10271Chr10:2540457..2540481 (25 bp)
TTTGCTGTCCAGCTCAAGTCACTGC
LOC_Os10g05210
Os.11061.1.S1_at--226--6851Chr10:2540495..2540519 (25 bp)
GTTTGAAGCTGATGTATCTGCAACT
LOC_Os10g05210
Os.11061.1.S1_at--935--10151Chr10:2540509..2540533 (25 bp)
TATCTGCAACTTTTTATCCCTACAC
LOC_Os10g05210
Os.11061.1.S1_at--646--3351Chr10:2540528..2540552 (25 bp)
CTACACCGCCTTTTATACCACAGGT
LOC_Os10g05210
Target Sequence 
TACAGGATGGGTGCTGCGCAAGACCATTGAGTTGGGTGCAGTCCTTCCGCTGGAAGTGCCCTCTGTACCGTTGACGGATA
GTCATTTGGTTAGAAGGCCTCCAGTCAGGATATTAGGTCTTGTGGAGGAAGATGATTTGTTTTTTATATGGACGGCAGTT
GGTGTCTTTGCTGTCCAGCTCAAGTCACTGCAGTTCAAAAAGGTGTTTGAAGCTGATGTATCTGCAACTTTTTATCCCTA
CACCGCCTTTTATACCACAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis