Browse Element(s) Details


Os.11083.1.S1_at

Description gb:AK063258.1
DB_XREF= gi:32973276
TID=Os.11083.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A02, full insert sequence.
FL= gb:AK063258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4501011/11ATP-binding cassette sub-family F member 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44970Os.10827.1.S1_x_at11/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44970Os.46055.2.S1_x_at5/118+28094240..28098029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44980NANA8+28098638..28098910hypothetical protein
LOC_Os08g44990OsAffx.25936.7.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_s_at11/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.1.S1_at6/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.2.S1_x_at5/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g44990OsAffx.25936.5.S1_x_at1/118+28100537..28105476transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g45000Os.50055.1.S1_at11/118+28111359..28113185phosphate:H+ symporter family protein, expressed
LOC_Os08g45000OsAffx.11592.1.S1_x_at1/118+28111359..28113185phosphate:H+ symporter family protein, expressed
LOC_Os08g45010Os.11083.1.S1_at11/118+28117584..28121148ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os08g45010Os.36409.1.S1_x_at1/118+28117584..28121148ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os08g45030Os.11762.5.S1_x_at11/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.1.S2_x_at11/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.2.S1_x_at9/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.1.S1_x_at2/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45040OsAffx.17519.1.S1_s_at11/118+28139495..28141626Zinc finger protein 593, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11083.1.S1_at--537--591Chr08:28118317..28118341 (25 bp)
ATGCCGGCCCTACAGTACATGATGA
LOC_Os08g45010
Os.11083.1.S1_at--865--11Chr08:28118251..28118275 (25 bp)
ATTGGTAAGTTTGGCCTGTCTGGGA
LOC_Os08g45010
Os.11083.1.S1_at--143--711Chr08:28118209..28118233 (25 bp)
ATGAGGAATCTCTCTGATGGGCAGA
LOC_Os08g45010
Os.11083.1.S1_at--186--9611Chr08:28118175..28118199 (25 bp)
TCATCTTTGCGTGGCTGGCTTACAG
LOC_Os08g45010
Os.11083.1.S1_at--697--2551Chr08:28118142..28118166 (25 bp)
AACTGCTGCTGCTTGACGAGCCGAC
LOC_Os08g45010
Os.11083.1.S1_at--181--1391Chr08:28118100..28118124 (25 bp)
AGACCATCGATTCTCTGGCTGAGGC
LOC_Os08g45010
Os.11083.1.S1_at--980--10851Chr08:28118053..28118077 (25 bp)
TTGGTCCTGGTGAGTCATGACTTCA
LOC_Os08g45010
Os.11083.1.S1_at--727--5691Chr08:28118035..28118059 (25 bp)
GACTTCAGGCTTATCAACCAGGTTG
LOC_Os08g45010
Os.11083.1.S1_at--425--10371Chr08:28117890..28117914 (25 bp)
TTTTTATCTTCCTCTCTTGACAGCT
LOC_Os08g45010
Os.11083.1.S1_at--327--1191Chr08:28117799..28117823 (25 bp)
AGTAGCCTGCTATCTTAATTATCAC
LOC_Os08g45010
Os.11083.1.S1_at--301--3131Chr08:28117783..28117807 (25 bp)
AATTATCACTATTGCACTTGGAGAG
LOC_Os08g45010
Target Sequence 
ATGCCGGCCCTACAGTACATGATGAGGGAATACCCTGGGAATGAGGAGGAGAAGATGAGGGCTGCAATTGGTAAGTTTGG
CCTGTCTGGGAAGGCGCAGGTGATGCCAATGAGGAATCTCTCTGATGGGCAGAGGAGCCGCGTCATCTTTGCGTGGCTGG
CTTACAGGCAGCCTCAACTGCTGCTGCTTGACGAGCCGACGAACCATCTGGACATTGAGACCATCGATTCTCTGGCTGAG
GCACTGAACGAGTGGGACGGTGGTTTGGTCCTGGTGAGTCATGACTTCAGGCTTATCAACCAGGTTGCTCAAGAGATTTG
GGTGTGCGAGAAGCAGGCGGTGACCAGGTGGGAAGGTGATATCATGGACTTCAAGGAGCACTTGAGGAGCAGGGCTGGTC
TCTCTGACTAGTTCTATCTGNCCTTCGTTTTTATCTTCCTCTCTTGACAGCTCCTCGGAGGTTTATTATAATAGCCAAAC
CAAGTTTTGTNTTGTATCTTGGAGTCTAATTTATTTGTAGTAGCCTGCTATCTTAATTATCACTATTGCACTTGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis