Browse Element(s) Details


Os.11123.1.S1_at

Description gb:AK063642.1
DB_XREF= gi:32973660
TID=Os.11123.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G12, full insert sequence.
FL= gb:AK063642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4307011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43050Os.11117.1.S1_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43050Os.11117.1.S2_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43060OsAffx.16690.1.S1_s_at10/117+25796201..25799082Transcription initiation protein Spt4 containing protein, expressed
LOC_Os07g43070Os.11123.1.S1_at11/117+25802650..25806058expressed protein
LOC_Os07g43080NANA7+25812937..25813662hypothetical protein
LOC_Os07g43090OsAffx.20387.1.S1_x_at2/117+25819289..25824215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43100NANA7+25828014..25828508retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11123.1.S1_at--146--5091Chr07:25803249..25803273 (25 bp)
GCACCATCACGTTCGGAGAGGCTGA
LOC_Os07g43070
Os.11123.1.S1_at--605--911Chr07:25803231..25803255 (25 bp)
AGGCTGACACCGACAGCGTGGTGAA
LOC_Os07g43070
Os.11123.1.S1_at--511--1451Chr07:25803183..25803207 (25 bp)
AGAAGCTGACGGACCTGACGGGCAA
LOC_Os07g43070
Os.11123.1.S1_at--422--5751Chr07:25803167..25803191 (25 bp)
GACGGGCAACGATATCTTCAAAGGC
LOC_Os07g43070
Os.11123.1.S1_at--913--3971Chr07:25803046..25803070 (25 bp)
CGGGACTACCTTGGTGGGATCCGCA
LOC_Os07g43070
Os.11123.1.S1_at--728--3531Chr07:25802999..25803023 (25 bp)
CATCGCGCTGGTCTAACAAACAAAA
LOC_Os07g43070
Os.11123.1.S1_at--839--8551Chr07:25802961..25802985 (25 bp)
TGGATGGACATAGCCTACTACGACA
LOC_Os07g43070
Os.11123.1.S1_at--468--9871Chr07:25802946..25802970 (25 bp)
TACTACGACATTCTTGGACTCGTCC
LOC_Os07g43070
Os.11123.1.S1_at--1134--4191Chr07:25802919..25802943 (25 bp)
CCCGTTGCCGTCATTAGGAGTGATT
LOC_Os07g43070
Os.11123.1.S1_at--25--5991Chr07:25802867..25802891 (25 bp)
GAGACTGATCGATTGAACTGCTGCT
LOC_Os07g43070
Os.11123.1.S1_at--632--2551Chr07:25802852..25802876 (25 bp)
AACTGCTGCTGCATGGTTTGTTTCC
LOC_Os07g43070
Target Sequence 
GCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCCCGGAGAAGAAGCTGACGGAC
CTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGGGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGA
GATGACCGGCAGCGACATCTTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCANGCCCCCCGGCG
GCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATAGCCTACTACGACATTCTTGG
ACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTTCTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAAC
TGCTGCTGCATGGTTTGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis