Browse Element(s) Details


OsAffx.16690.1.S1_s_at

Description tigr:9635.m04317
TID=OsAffx.16690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4306010/11Transcription initiation protein Spt4 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43050Os.11117.1.S1_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43050Os.11117.1.S2_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43060OsAffx.16690.1.S1_s_at10/117+25796201..25799082Transcription initiation protein Spt4 containing protein, expressed
LOC_Os07g43070Os.11123.1.S1_at11/117+25802650..25806058expressed protein
LOC_Os07g43080NANA7+25812937..25813662hypothetical protein
LOC_Os07g43090OsAffx.20387.1.S1_x_at2/117+25819289..25824215retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16690.1.S1_s_at--1022--5831NONE
GACCTACGATCAGTTCATGGAGCAA
NONE
OsAffx.16690.1.S1_s_at--35--371Chr07:25797899..25797923 (25 bp)
ATAATCTCCGTGATGGATCCTGGTA
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--952--8191Chr07:25796686..25796710 (25 bp)
GGAAGTTCATCCCTGGGTGCTATAC
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--1038--2151Chr07:25796450..25796474 (25 bp)
ACAGCGTGCCTGAACAACCTATATT
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--244--8091Chr07:25796419..25796443 (25 bp)
GGAGCGTCACGATCCTGAAGCAAAT
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--879--10151Chr07:25796378..25796402 (25 bp)
TATCTAGATACATTCCTTGCCAAGG
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--466--5471Chr07:25796353..25796377 (25 bp)
GAACTGCTGTTACCTGTTGTGTCCA
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--480--1771Chr07:25796342..25796366 (25 bp)
ACCTGTTGTGTCCATGCTTAGAGCA
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--694--8931Chr07:25796304..25796328 (25 bp)
TGACCGTGCACCTTCTGTACTTGAA
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--452--1851Chr07:25796248..25796272 (25 bp)
ACGCAATGTGCGCTTCTTAGCTAGG
LOC_Os07g43060
OsAffx.16690.1.S1_s_at--726--10451Chr07:25796232..25796256 (25 bp)
TTAGCTAGGAATACGTGCGCTTCTA
LOC_Os07g43060
Target Sequence 
GACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCA
ACTGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT
GGGAAGTTCATCCCTGGGTGCTATACGCTGGCTGTCGCGGAGGAGCTTCCGGAGGAGTACCAAAGCGTTTGCCAAGACAA
CAATGTGCAATACTTCCCTCCGAAGCGTGTCTGAACAAGCCATATATAGTCCCTTCAAGAGAACAGCGTGCCTGAACAAC
CTATATTCCCTTCGGAGCGTCACGATCCTGAAGCAAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGG
AACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCA
AGAGCAGTGTTTCAATCTACTCTAACGCAATGTGCGCTTCTTAGCTAGGAATACGTGCGCTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16690.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis