Browse Element(s) Details


Os.51780.1.S1_at

Description gb:AK063693.1
DB_XREF= gi:32973711
TID=Os.51780.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F11, full insert sequence.
FL= gb:AK063693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4302011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42994Os.54930.1.S1_at10/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42994Os.33601.3.S1_x_at1/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g43010Os.15811.1.S1_at10/117+25760117..25763970expressed protein
LOC_Os07g43010OsAffx.16689.1.S1_at4/117+25760117..25763970expressed protein
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43050Os.11117.1.S1_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43050Os.11117.1.S2_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43060OsAffx.16690.1.S1_s_at10/117+25796201..25799082Transcription initiation protein Spt4 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51780.1.S1_at--502--4851Chr07:25773344..25773368 (25 bp)
GCTACCCGCTGAAGCTGCAGGTGGT
LOC_Os07g43020
Os.51780.1.S1_at--1074--8271Chr07:25773273..25773297 (25 bp)
GGCATGCTCCCCAAGATCGACTGGC
LOC_Os07g43020
Os.51780.1.S1_at--1118--4571Chr07:25773117..25773141 (25 bp)
GCGCTCCTCGAGATCCACATCGAGG
LOC_Os07g43020
Os.51780.1.S1_at--594--6191Chr07:25773007..25773031 (25 bp)
GAGGAACTGACTCGCGTGTGCCTCA
LOC_Os07g43020
Os.51780.1.S1_at--455--9671Chr07:25772985..25773009 (25 bp)
TCACCTTGGTTTCTCCTCGCATAGT
LOC_Os07g43020
Os.51780.1.S1_at--902--9491Chr07:25772974..25772998 (25 bp)
TCTCCTCGCATAGTGTTCCATGGCT
LOC_Os07g43020
Os.51780.1.S1_at--171--6691Chr07:25772960..25772984 (25 bp)
GTTCCATGGCTTTACAACTCTTAAA
LOC_Os07g43020
Os.51780.1.S1_at--110--751Chr07:25772931..25772955 (25 bp)
ATGTATCAAGTGTGGAACGCGGAGA
LOC_Os07g43020
Os.51780.1.S1_at--949--2791Chr07:25772886..25772910 (25 bp)
AAGATGTTTGGCTTGTAATCGTACT
LOC_Os07g43020
Os.51780.1.S1_at--398--8291Chr07:25772877..25772901 (25 bp)
GGCTTGTAATCGTACTTTAATGTCA
LOC_Os07g43020
Os.51780.1.S1_at--1147--10491Chr07:25772861..25772885 (25 bp)
TTAATGTCAGTAATGGGTGCTCCAA
LOC_Os07g43020
Target Sequence 
GCTACCCGCTGAAGCTGCAGGTGGTGAAGTGGTCGACCAAGGAGGCGGAGCCCAACCCGGAGTTCCTCCGCGGCATGCTC
CCCAAGATCGACTGGCCCGCGCTCGTCGCCGCCACCCAGGCCCTCGGCCTCCCGGAGCTCCTNCCCGAGGCGCCCCCCAC
CGACGCCGAGCTCTCCGCCGAGGGCGCCGCCGCCGACGAGGGCAGCGCGCTCCGCCGCCTCCACCGCGCGCTCCTCGAGA
TCCACATCGAGGAGGGCGCCCTCGTCTGCCCCGACACCGACCGCTGCTTCCCCATCTCCAGGGGCGTCCCCAACATGCTC
CTCCACGAGGACGAGGTGAGGAACTGACTCGCGTGTGCCTCACCTTGGTTTCTCCTCGCATAGTGTTCCATGGCTTTACA
ACTCTTAAATTGGATGTATCAAGTGTGGAACGCGGAGATTATAATCCGATAGATACTTAAGATGTTTGGCTTGTAATCGT
ACTTTAATGTCAGTAATGGGTGCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis