Browse Element(s) Details


Os.15811.1.S1_at

Description gb:AK059960.1
DB_XREF= gi:32969978
TID=Os.15811.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F03, full insert sequence.
FL= gb:AK059960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4301010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42970OsAffx.5616.1.S1_at11/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42970Os.51127.2.S1_x_at1/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42994Os.54930.1.S1_at10/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42994Os.33601.3.S1_x_at1/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g43010Os.15811.1.S1_at10/117+25760117..25763970expressed protein
LOC_Os07g43010OsAffx.16689.1.S1_at4/117+25760117..25763970expressed protein
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15811.1.S1_at--836--6991Chr07:25760493..25760517 (25 bp)
GTACGTATCTAGCTAGTGGAATCCA
LOC_Os07g43010
Os.15811.1.S1_at--373--4171Chr07:25760458..25760482 (25 bp)
CGCCTTTGCTCTCATGTATGGATTA
LOC_Os07g43010
Os.15811.1.S1_at--906--6011Chr07:25760422..25760446 (25 bp)
GAGAGTACCATCATCACATTGCCAT
LOC_Os07g43010
Os.15811.1.S1_at--972--2071Chr07:25760407..25760431 (25 bp)
ACATTGCCATTCTTGGCCATTTATA
LOC_Os07g43010
Os.15811.1.S1_at--120--10171Chr07:25760368..25760392 (25 bp)
TATACACTGCCAATACGAAACGTCT
LOC_Os07g43010
Os.15811.1.S1_at--916--8151Chr07:25760331..25760355 (25 bp)
GGAACAGTCCCCATCACAGGTTGAT
LOC_Os07g43010
Os.15811.1.S1_at--78--811Chr07:25760282..25760306 (25 bp)
ATGGGCAAATGCCACTCTCAGCTCA
LOC_Os07g43010
Os.15811.1.S1_at--464--1571Chr07:25760253..25760277 (25 bp)
AGCTCAATATTCCTAGCCCTATTTT
LOC_Os07g43010
Os.15811.1.S1_at--106--3631Chr07:25760202..25760226 (25 bp)
CTTGATCTCAGTAGCGCGTCTTGTT
LOC_Os07g43010
Os.15811.1.S1_at--276--6971Chr07:25760192..25760216 (25 bp)
GTAGCGCGTCTTGTTTTGATACAGA
LOC_Os07g43010
Os.15811.1.S1_at--1079--3611Chr07:25760092..25760116 (25 bp)
CTTGTTATTCACCAGTATATCGCCC
NONE
Target Sequence 
GTACGTATCTAGCTAGTGGAATCCACCTTCCTCTCCGCCTTTGCTCTCATGTATGGATTAGAAGTTTTTGGGAGAGTACC
ATCATCACATTGCCATTCTTGGCCATTTATATTGCCTGATTTTATTATACACTGCCAATACGAAACGTCTAATGGGGATT
GGGGAACAGTCCCCATCACAGGTTGATGTCTGTAACTAATGGAGGTTTGTAATGGGCAAATGCCACTCTCAGCTCAGCTC
AGCTCAATATTCCTAGCCCTATTTTCTTCTTCGTTTTTCTCCTCTCCTCCCCTTGATCTCAGTAGCGCGTCTTGTTTTGA
TACAGAGAGCACTATGAAAATGTTCTTTGCACAGAATGAATGGTTTATCTGATACAGTAGTCTCATGTTTTATCAGACAC
TCTTGTTATTCACCAGTATATCGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis