Browse Element(s) Details


OsAffx.5617.1.S1_x_at

Description tigr:9635.m04313
TID=OsAffx.5617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CG-1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4303010/11CG-1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42994Os.54930.1.S1_at10/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42994Os.33601.3.S1_x_at1/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g43010Os.15811.1.S1_at10/117+25760117..25763970expressed protein
LOC_Os07g43010OsAffx.16689.1.S1_at4/117+25760117..25763970expressed protein
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43050Os.11117.1.S1_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43050Os.11117.1.S2_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43060OsAffx.16690.1.S1_s_at10/117+25796201..25799082Transcription initiation protein Spt4 containing protein, expressed
LOC_Os07g43070Os.11123.1.S1_at11/117+25802650..25806058expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5617.1.S1_x_at--154--1431Chr07:25775891..25775915 (25 bp)
AGAACGACGGGTCACATTCTGCTGC
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--1131--91Chr07:25775876..25775900 (25 bp)
ATTCTGCTGCTGTTCGTATCCAAAA
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--243--31NONE
ATTGTCAAGATACAGGCCCATGTAC
NONE
OsAffx.5617.1.S1_x_at--365--6171Chr07:25775151..25775175 (25 bp)
GAGGATAGTCTGGTCTGTAGGCATT
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--147--2411Chr07:25775063..25775087 (25 bp)
AAACAGCTTGAAGGTCCATCACCGA
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--472--3551Chr07:25775047..25775071 (25 bp)
CATCACCGATCCAACAGCTTGAAGG
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--288--4931Chr07:25775031..25775055 (25 bp)
GCTTGAAGGTCCATCGCAGATCCAA
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--91--5951Chr07:25774930..25774954 (25 bp)
GAGCACTAGCTCGTGTGAAATCGAT
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--891--511Chr07:25774911..25774935 (25 bp)
ATCGATGACTCAATACCCAGAAGCA
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--980--3411Chr07:25774856..25774876 (21 bp)
CAGAACTGCAGGAGCCTCAGGCGAT
LOC_Os07g43030
OsAffx.5617.1.S1_x_at--995--4871Chr07:25774701..25774725 (25 bp)
GCTATTGCTGATGGAGGCGACTTCA
LOC_Os07g43030
Target Sequence 
AGAACGACGGGTCACATTCTGCTGCTGTTCGTATCCAAAATAAGTTTAGAGGATGGAAAGGTAGAAAGGAGTTTATGATT
ATTCGACAGAAAATTGTCAAGATACAGGCCCATGTACGAGGACATCAAGTAAGGAAAAGCTATCGGAGGATAGTCTGGTC
TGTAGGCATTGTGGAGAAAATTATATTGAGGTGGAGGAGAAAGCGAAGGGGCCTGCGTGGTTTCCAACCGGTAAAACAGC
TTGAAGGTCCATCACCGATCCAACAGCTTGAAGGTCCATCGCAGATCCAACCAGCAAAGGAAGAGGAAGAGGATGAATAT
GATTACCTCAAAGATGGCAGGAAGCAAGCCGAAGGCAGATTACAGAGAGCACTAGCTCGTGTGAAATCGATGACTCAATA
CCCAGAAGCAAGAGAACAGTACAGTAGAATCGCAAACCGTGTTACAGAACTGCAGGAGCCTCAGGCGATGATGATTCAGG
ATGATATGCAAAGTGATGGAGCTATTGCTGATGGAGGCGACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5617.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis