Browse Element(s) Details


Os.11117.1.S1_at

Description gb:AK070292.1
DB_XREF= gi:32980316
TID=Os.11117.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050C05, full insert sequence.
FL= gb:AK070292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4305011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43050Os.11117.1.S1_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43050Os.11117.1.S2_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43060OsAffx.16690.1.S1_s_at10/117+25796201..25799082Transcription initiation protein Spt4 containing protein, expressed
LOC_Os07g43070Os.11123.1.S1_at11/117+25802650..25806058expressed protein
LOC_Os07g43080NANA7+25812937..25813662hypothetical protein
LOC_Os07g43090OsAffx.20387.1.S1_x_at2/117+25819289..25824215retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11117.1.S1_at--866--5651Chr07:25794191..25794213 (23 bp)
GACAGTGTGTCACCTGCACGCAGAA
LOC_Os07g43050
Os.11117.1.S1_at--304--8031Chr07:25794229..25794253 (25 bp)
GGAGTCGTAGCTACAGTCCTGATGA
LOC_Os07g43050
Os.11117.1.S1_at--192--3171Chr07:25794360..25794384 (25 bp)
CAATCGCCTGTGTGTAAAAGCCCCA
LOC_Os07g43050
Os.11117.1.S1_at--134--2431Chr07:25794390..25794414 (25 bp)
AAAAGAAGCCCCAGTATGTCGCCTG
LOC_Os07g43050
Os.11117.1.S1_at--861--951Chr07:25794498..25794522 (25 bp)
AGGACACCATCTTCTCAAGAGGGAT
LOC_Os07g43050
Os.11117.1.S1_at--506--2791Chr07:25794514..25794538 (25 bp)
AAGAGGGATCTCCTGTCAAGCGCTA
LOC_Os07g43050
Os.11117.1.S1_at--292--10131Chr07:25794537..25794561 (25 bp)
TATGATGAGCCTAGGCGCTCTCGTA
LOC_Os07g43050
Os.11117.1.S1_at--269--6971Chr07:25794559..25794583 (25 bp)
GTAGCCCTTCGACGTAAAGCTGAAT
LOC_Os07g43050
Os.11117.1.S1_at--1139--5891Chr07:25794709..25794733 (25 bp)
GAGCTGCTCATGTCAAGAGGCTGTT
LOC_Os07g43050
Os.11117.1.S1_at--196--1411Chr07:25794876..25794900 (25 bp)
AGACTTGTCTCTTAGCATTTGATAG
LOC_Os07g43050
Os.11117.1.S1_at--650--6891Chr07:25794900..25794924 (25 bp)
GTATCACTTCTCTTTTGGTACTTGG
LOC_Os07g43050
Target Sequence 
GACAGTGTGTCACCTGCACGCAGAAGCCTGAGTCGTAGCAGGAGTCGTAGCTACAGTCCTGATGATTACAGGAAGCGTGG
CAAACACAGTCAATCGCCTGTGTGTAAAAGCCCCAGTGCAAAAAGAAGCCCCAGTATGTCGCCTGCACGCAGAAGCCCCA
GTGCTTCGCCTGCACGTAGAAGCCCTAGTGCTTCGCCTGTGCGCAGAAGCCCTAGTCGCTCTCCTCGCAGGACACCATCT
TCTCAAGAGGGATCTCCTGTCAAGCGCTATGATGAGCCTAGGCGCTCTCGTAGCCCTTCGACGTAAAGCTGAATATCAAG
AATATGCATCAAACAGCTGAGGATGAATGGAGTAGAGCTGCTCATGTCAAGAGGCTGTTCGGTGCCTGATGATGGAAGGC
TCCGGTGAAAAATTGGAAGTTACAGGGAGTGCTATCAGTTGCTGTTACAAGTGAACACTGGTTTCTTGTGAACACCTTAA
CGCTTGTTAAGAACTATATGTACTTCAATTCCTTTTCATACAGACTTGTCTCTTAGCATTTGATAGTATCACTTCTCTTT
TGGTACTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis