Browse Element(s) Details


Os.11129.1.S1_at

Description gb:AB011416.1
DB_XREF= gi:2920319
TID=Os.11129.1
CNT=65
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11129 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) mRNA for glutamyl-tRNA reductase, complete cds.
PROD=glutamyl-tRNA reductase
FL= gb:AB011416.1 gb:AK099393.1 gb:AK062231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3584011/11Glutamyl-tRNA reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein
LOC_Os10g35790Os.46127.1.S1_x_at2/1110+18812615..18813979Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35800Os.16692.2.S1_at11/1110+18816916..18818979expressed protein
LOC_Os10g35800OsAffx.26828.1.S1_x_at1/1110+18816916..18818979expressed protein
LOC_Os10g35810OsAffx.18528.1.S1_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35810Os.16692.1.S1_x_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35820Os.7563.1.S1_at11/1110+18822696..18823361expressed protein
LOC_Os10g35830OsAffx.30680.1.S1_at11/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.1.S1_x_at10/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.2.S1_at9/1110+18824973..18826935hypothetical protein
LOC_Os10g35840Os.11129.1.S1_at11/1110+18829486..18832897Glutamyl-tRNA reductase, chloroplast precursor, putative, expressed
LOC_Os10g35850Os.4688.1.S1_at11/1110+18836717..18839202Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed
LOC_Os10g35880NANA10+18847579..18853656hypothetical protein
LOC_Os10g35890NANA10+18853990..18858417hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0006783biological_processheme biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
GO:0008883molecular_functionglutamyl-tRNA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11129.1.S1_at--722--4351Chr10:18830327..18830351 (25 bp)
CCAGAAATGTCAGCGCCTGTGTGTC
LOC_Os10g35840
Os.11129.1.S1_at--764--4271Chr10:18830312..18830336 (25 bp)
CCTGTGTGTCTGAAGTTGGCCATGC
LOC_Os10g35840
Os.11129.1.S1_at--629--10871Chr10:18830297..18830321 (25 bp)
TTGGCCATGCGCGAGTATACAACGT
LOC_Os10g35840
Os.11129.1.S1_at--672--1071Chr10:18830166..18830190 (25 bp)
AGGGACTCGCTGGAGACTGTTCCGA
LOC_Os10g35840
Os.11129.1.S1_at--795--2731Chr10:18830136..18830160 (25 bp)
AAGAAGCTGAGGTCCTACGCCGACA
LOC_Os10g35840
Os.11129.1.S1_at--93--5931Chr10:18830097..18830121 (25 bp)
GAGCTTGAGAAGTGCCTCCAGAAGA
LOC_Os10g35840
Os.11129.1.S1_at--544--971Chr10:18830030..18830054 (25 bp)
AGGAGCTCAGCACCGGCATCGTGAA
LOC_Os10g35840
Os.11129.1.S1_at--597--651Chr10:18829926..18829950 (25 bp)
ATGCACGCCCTCAACAGGATGTTCA
LOC_Os10g35840
Os.11129.1.S1_at--701--991Chr10:18829911..18829935 (25 bp)
AGGATGTTCAGCCTCGACACCGAGA
LOC_Os10g35840
Os.11129.1.S1_at--274--10371Chr10:18829814..18829838 (25 bp)
TTTTTTCAGCCCGTGTATCTACTAT
LOC_Os10g35840
Os.11129.1.S1_at--704--6891Chr10:18829789..18829813 (25 bp)
GTATACTACTACCATATCTGTCCAG
LOC_Os10g35840
Target Sequence 
CCAGAAATGTCAGCGCCTGTGTGTCTGAAGTTGGCCATGCGCGAGTATACAACGTCGATGACTTGAAAGAGGTTGTGGAA
GCCAACAAGGAGGACCGGCTTAGGAAAGCAATGGAGGCCCAAACAATCATCACCCAAGAATTGAAACGGTTCGAGGCATG
GAGGGACTCGCTGGAGACTGTTCCGACTATCAAGAAGCTGAGGTCCTACGCCGACAGGATCAGGGCTTCGGAGCTTGAGA
AGTGCCTCCAGAAGATCGGCGAAGACGCCCTCACCAAGAAGATGAGAAGATCCATCGAGGAGCTCAGCACCGGCATCGTG
AACAAGCTTCTCCACGGCCCATTGCAGCACCTGAGATGTGACGGCAGCGACAGCCGCACCCTCGATGAGACGCTGGAGAA
CATGCACGCCCTCAACAGGATGTTCAGCCTCGACACCGAGAAGGCGATCATTGAGCAGAAGATCAAGGCGAAGGTGGAGA
AGTCCCAGAACTGAGATTGAAGAAGAGATTTTTTTTTTTTTCAGCCCGTGTATCTACTATGTATACTACTACCATATCTG
TCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis