Browse Element(s) Details


Os.11150.1.S1_at

Description gb:AK065720.1
DB_XREF= gi:32975738
TID=Os.11150.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041G12, full insert sequence.
FL= gb:AK065720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3249011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32440NANA3+18504330..18507343expressed protein
LOC_Os03g32450NANA3+18510410..18510868hypothetical protein
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein
LOC_Os03g32470Os.9776.1.S1_a_at11/113+18524368..18527092oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g32480Os.52238.1.S1_at1/113+18527335..18530223retrotransposon protein, putative, unclassified
LOC_Os03g32490Os.11150.1.S1_at11/113+18530352..18532456expressed protein
LOC_Os03g32499Os.45017.1.S1_at11/113+18534676..18535271NA
LOC_Os03g32510Os.31497.2.S1_x_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32510Os.31497.1.S1_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32520OsAffx.29169.1.S1_at11/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32520OsAffx.29169.3.S1_at4/113+18551186..18553110retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11150.1.S1_at--1009--1671Chr03:18531232..18531256 (25 bp)
ACCGGATGGTACGACGGCCAAATGT
LOC_Os03g32490
Os.11150.1.S1_at--948--8651Chr03:18531212..18531234 (23 bp)
TGTGGGTCAAGCCACCAGAGGTATT
LOC_Os03g32490
Os.11150.1.S1_at--1039--851Chr03:18531032..18531055 (24 bp)
AGGCTCTTGGGATCTTACAAGGTAA
LOC_Os03g32490
Os.11150.1.S1_at--288--2671Chr03:18530904..18530928 (25 bp)
AAGCCGGTGATTAACCTGCTGAAGC
LOC_Os03g32490
Os.11150.1.S1_at--1150--1171Chr03:18530546..18530570 (25 bp)
AGTACTGCAAGTGGGACGACCTGCT
LOC_Os03g32490
Os.11150.1.S1_at--717--8111Chr03:18530533..18530557 (25 bp)
GGACGACCTGCTCAACTGACAAAAT
LOC_Os03g32490
Os.11150.1.S1_at--128--3091Chr03:18530511..18530535 (25 bp)
AATACTTCTGTATTACCCAACGGAT
LOC_Os03g32490
Os.11150.1.S1_at--52--6491Chr03:18530489..18530513 (25 bp)
GATACGGTGTGCAGTGTGTCCTGAA
LOC_Os03g32490
Os.11150.1.S1_at--707--7471Chr03:18530476..18530500 (25 bp)
GTGTGTCCTGAATCCTGATATATGC
LOC_Os03g32490
Os.11150.1.S1_at--37--5431Chr03:18530439..18530463 (25 bp)
GAAGCCTCCGCAACTGTGTAATCGG
LOC_Os03g32490
Os.11150.1.S1_at--922--1571Chr03:18530413..18530437 (25 bp)
ACGAAATTTTGTGACCATTGGTTGC
LOC_Os03g32490
Target Sequence 
ACCGGATGGTACGACGGCCAAATGTGGGTCAAGCCACCAGAGGTATTGGCTCGTGANAGGCTCTTGGGATCTTACAAGGT
AAAGCCGGTGATTAACCTGCTGAAGCAGACGCTGGTGGGCACCGGCGCTCTGCTGGTCGGCGCGGTGTCGCTGTTCGCGT
TCGCGGCCCCCGTCGAGGACTTCCTGCACTCCGTGAACGCACCACCATCCGCTGCCTCCTCCAAGCCCAGTCTCAGAAGG
GAGGAGCTGCTGCGTCTGCCCGTGGAGGTGAGGCAAGACGACGACCTCGCCGCTGCCGCCGCGGAGGCCGCCGACGGACG
GCCGGTCTACTGCAGGGACCGCTACTACCGGGCGCTCGCCGGCGGGCAGTACTGCAAGTGGGACGACCTGCTCAACTGAC
AAAATACTTCTGTATTACCCAACGGATACGGTGTGCAGTGTGTCCTGAATCCTGATATATGCAGATTGGNATGCGAAGCC
TCCGCAACTGTGTAATCGGAACGAAATTTTGTGACCATTGGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis