Browse Element(s) Details


Os.45017.1.S1_at

Description gb:D15919
DB_XREF= gi:287114
DB_XREF=RICC1528A
CLONE=C1528A
TID=Os.45017.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0051C19.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3249911/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32450NANA3+18510410..18510868hypothetical protein
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein
LOC_Os03g32470Os.9776.1.S1_a_at11/113+18524368..18527092oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g32480Os.52238.1.S1_at1/113+18527335..18530223retrotransposon protein, putative, unclassified
LOC_Os03g32490Os.11150.1.S1_at11/113+18530352..18532456expressed protein
LOC_Os03g32499Os.45017.1.S1_at11/113+18534676..18535271NA
LOC_Os03g32510Os.31497.2.S1_x_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32510Os.31497.1.S1_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32520OsAffx.29169.1.S1_at11/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32520OsAffx.29169.3.S1_at4/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32526Os.8207.1.S1_at2/113+18557959..18563602expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45017.1.S1_at--801--8971Chr03:18534998..18535086 (25 bp)
TGAACATCCAGGTTGGGTCATGCTA
LOC_Os03g32499
Os.45017.1.S1_at--854--4331Chr03:18535071..18535093 (23 bp)
CCAGGTTGGGTCATGCTAGTTTCTT
LOC_Os03g32499
Os.45017.1.S1_at--185--631Chr03:18535081..18535105 (25 bp)
ATGCTAGTTTCTTGGCTTGATGGAT
LOC_Os03g32499
Os.45017.1.S1_at--47--7991Chr03:18535102..18535126 (25 bp)
GGATGCATGTTGTTTTAACTTCAAT
LOC_Os03g32499
Os.45017.1.S1_at--1080--2031Chr03:18535119..18535143 (25 bp)
ACTTCAATTGGTTCCTTCCCTCCAT
LOC_Os03g32499
Os.45017.1.S1_at--913--6691Chr03:18535129..18535153 (25 bp)
GTTCCTTCCCTCCATGTAGGATGAA
LOC_Os03g32499
Os.45017.1.S1_at--732--4331Chr03:18535140..18535164 (25 bp)
CCATGTAGGATGAATGTGCGTATGA
LOC_Os03g32499
Os.45017.1.S1_at--1124--771Chr03:18535153..18535177 (25 bp)
ATGTGCGTATGATTGTTTGGCTATT
LOC_Os03g32499
Os.45017.1.S1_at--159--4651Chr03:18535157..18535181 (25 bp)
GCGTATGATTGTTTGGCTATTTAAG
LOC_Os03g32499
Os.45017.1.S1_at--710--8292Chr03:18535171..18535195 (25 bp)
GGCTATTTAAGATGCCTTTTCTTTT
LOC_Os03g32499
Os.45017.1.S1_at--234--10571Chr03:18535189..18535213 (25 bp)
TTCTTTTCCTTTTGTAGTAGCAAGA
LOC_Os03g32499
Target Sequence 
TGAACATCCAGGTTGGGTCATGCTAGTTTCTTGGCTTGATGGATGCATGTTGTTTTAACTTCAATTGGTTCCTTCCCTCC
ATGTAGGATGAATGTGCGTATGATTGTTTGGCTATTTAAGATGCCTTTTCTTTTCCTTTTGTAGTAGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis