Browse Element(s) Details


OsAffx.25340.1.S1_at

Description tigr:9631.m03176
TID=OsAffx.25340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3246011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32410OsAffx.13158.1.S1_at8/113+18490260..18492227hypothetical protein
LOC_Os03g32420Os.55531.1.S1_at10/113+18493855..18494861expressed protein
LOC_Os03g32430OsAffx.3389.1.S1_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32430OsAffx.3389.1.S1_x_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32440NANA3+18504330..18507343expressed protein
LOC_Os03g32450NANA3+18510410..18510868hypothetical protein
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein
LOC_Os03g32470Os.9776.1.S1_a_at11/113+18524368..18527092oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g32480Os.52238.1.S1_at1/113+18527335..18530223retrotransposon protein, putative, unclassified
LOC_Os03g32490Os.11150.1.S1_at11/113+18530352..18532456expressed protein
LOC_Os03g32499Os.45017.1.S1_at11/113+18534676..18535271NA
LOC_Os03g32510Os.31497.2.S1_x_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32510Os.31497.1.S1_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25340.1.S1_at--551--3111Chr03:18515166..18515190 (25 bp)
AATATGATCTCGTTACCTAACCCGG
LOC_Os03g32460
OsAffx.25340.1.S1_at--12--1571Chr03:18515117..18515141 (25 bp)
AGCTAACCATTCCTCTGCAGATGAT
LOC_Os03g32460
OsAffx.25340.1.S1_at--167--5231Chr03:18515088..18515112 (25 bp)
GAATTTCATGCAGGTGCTTCTCACA
LOC_Os03g32460
OsAffx.25340.1.S1_at--736--7311Chr03:18515075..18515099 (25 bp)
GTGCTTCTCACAGGGCGACACGAAA
LOC_Os03g32460
OsAffx.25340.1.S1_at--446--9711Chr03:18515025..18515049 (25 bp)
TCAACATCTTCACCACTAGTGCAGA
LOC_Os03g32460
OsAffx.25340.1.S1_at--925--31Chr03:18514988..18515012 (25 bp)
ATTGGGCCCTAATTGGAGATGCTCC
LOC_Os03g32460
OsAffx.25340.1.S1_at--654--8051Chr03:18514974..18514998 (25 bp)
GGAGATGCTCCCGATTGGACCCAAG
LOC_Os03g32460
OsAffx.25340.1.S1_at--419--7731Chr03:18514932..18514956 (25 bp)
GGTGGAACTTGCCTCATGACACACA
LOC_Os03g32460
OsAffx.25340.1.S1_at--437--4131Chr03:18514895..18514919 (25 bp)
CCGTTCTTCAAGTTCCAGTGGCGTC
LOC_Os03g32460
OsAffx.25340.1.S1_at--1091--4571Chr03:18514800..18514824 (25 bp)
GCGCTCTTGTGCTGCAAGCCGGAGA
LOC_Os03g32460
OsAffx.25340.1.S1_at--1141--6431Chr03:18514756..18514780 (25 bp)
GATCACATCATGCAGACTCAAGAGT
LOC_Os03g32460
Target Sequence 
AATATGATCTCGTTACCTAACCCGGGGTATCATTTGTACAACTGCGATGAGCTAACCATTCCTCTGCAGATGATAGAGGA
ATTTCATGCAGGTGCTTCTCACAGGGCGACACGAAACATGGCAGGAGAAGAAGTCGAGGAATCAACATCTTCACCACTAG
TGCAGATGTATGAGGTTGATTGGGCCCTAATTGGAGATGCTCCCGATTGGACCCAAGTACCGCAACGTGACGCCGGTGGA
ACTTGCCTCATGACACACACTGGGGGTACTCCCGTTCTTCAAGTTCCAGTGGCGTCCCTCCATCCTCATGGATGCGTCAC
TCGGTCTCCTCTCGTGGGGATTTGGGTGAGCTCACTCGGAGGGTGTGCGCTCTTGTGCTGCAAGCCGGAGAGATACAACA
TGCGCTTGAAGATCACATCATGCAGACTCAAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis