Browse Element(s) Details


Os.9776.1.S1_a_at

Description gb:AK067507.1
DB_XREF= gi:32977525
TID=Os.9776.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109I01, full insert sequence.
FL= gb:AK067507.1 gb:AK119216.1 gb:AK067647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3247011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32430OsAffx.3389.1.S1_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32430OsAffx.3389.1.S1_x_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32440NANA3+18504330..18507343expressed protein
LOC_Os03g32450NANA3+18510410..18510868hypothetical protein
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein
LOC_Os03g32470Os.9776.1.S1_a_at11/113+18524368..18527092oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g32480Os.52238.1.S1_at1/113+18527335..18530223retrotransposon protein, putative, unclassified
LOC_Os03g32490Os.11150.1.S1_at11/113+18530352..18532456expressed protein
LOC_Os03g32499Os.45017.1.S1_at11/113+18534676..18535271NA
LOC_Os03g32510Os.31497.2.S1_x_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32510Os.31497.1.S1_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32520OsAffx.29169.1.S1_at11/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32520OsAffx.29169.3.S1_at4/113+18551186..18553110retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9776.1.S1_a_at--963--3651Chr03:18526816..18526840 (25 bp)
CTTCATCATCAATGTCGCCGACATA
LOC_Os03g32470
Os.9776.1.S1_a_at--695--5671Chr03:18526835..18526859 (25 bp)
GACATACTCGAGGTCCTTACCAATG
LOC_Os03g32470
Os.9776.1.S1_a_at--537--7791Chr03:18526846..18526870 (25 bp)
GGTCCTTACCAATGGCGCGTACAAG
LOC_Os03g32470
Os.9776.1.S1_a_at--894--2211Chr03:18526866..18526890 (25 bp)
ACAAGAGCGTCGAGCACAGAGTACT
LOC_Os03g32470
Os.9776.1.S1_a_at--1019--5771Chr03:18526895..18526919 (25 bp)
GACGCAGAGAAAGGCCGAACCACCA
LOC_Os03g32470
Os.9776.1.S1_a_at--451--5431Chr03:18526911..18526935 (25 bp)
GAACCACCATCGTGACATTTCATGA
LOC_Os03g32470
Os.9776.1.S1_a_at--364--171Chr03:18526927..18526951 (25 bp)
ATTTCATGAAGCCTATGTCGATGGA
LOC_Os03g32470
Os.9776.1.S1_a_at--504--851Chr03:18526947..18526971 (25 bp)
ATGGAATGGTGAAGCCGATCCCGGA
LOC_Os03g32470
Os.9776.1.S1_a_at--1050--1571Chr03:18526980..18527004 (25 bp)
AGCTCAACGGAGCAGAGGCACGCTA
LOC_Os03g32470
Os.9776.1.S1_a_at--54--1331Chr03:18526993..18527017 (25 bp)
AGAGGCACGCTACAAGTCCATAGAA
LOC_Os03g32470
Os.9776.1.S1_a_at--557--1071Chr03:18527034..18527058 (25 bp)
AGGGAAACTTTGTGGCGCTTTCTGA
LOC_Os03g32470
Target Sequence 
CTTCATCATCAATGTCGCCGACATACTCGAGGTCCTTACCAATGGCGCGTACAAGAGCGTCGAGCACAGAGTACTCGCGG
ACGCAGAGAAAGGCCGAACCACCATCGTGACATTTCATGAAGCCTATGTCGATGGAATGGTGAAGCCGATCCCGGAGGTG
CTCAAGCTCAACGGAGCAGAGGCACGCTACAAGTCCATAGAAAGAATTGAGTATATCAAGGGAAACTTTGTGGCGCTTTC
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9776.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis