Browse Element(s) Details


OsAffx.13158.1.S1_at

Description tigr:9631.m03171
TID=OsAffx.13158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g324108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32350Os.27691.1.S1_x_at2/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32350Os.27691.2.S1_x_at1/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32360Os.27691.1.S1_x_at2/113+18467074..18468484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32370OsAffx.31869.4.S1_x_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.4.S1_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_x_at6/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_s_at4/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.5.S1_x_at2/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32380Os.46610.1.A1_x_at4/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32380OsAffx.29073.1.S1_x_at3/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32390OsAffx.13157.1.S1_at11/113+18482987..18484302hypothetical protein
LOC_Os03g32400Os.57162.1.S1_x_at11/113+18485450..18486362expressed protein
LOC_Os03g32400Os.57162.1.S1_at11/113+18485450..18486362expressed protein
LOC_Os03g32410OsAffx.13158.1.S1_at8/113+18490260..18492227hypothetical protein
LOC_Os03g32420Os.55531.1.S1_at10/113+18493855..18494861expressed protein
LOC_Os03g32430OsAffx.3389.1.S1_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32430OsAffx.3389.1.S1_x_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32440NANA3+18504330..18507343expressed protein
LOC_Os03g32450NANA3+18510410..18510868hypothetical protein
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13158.1.S1_at--1124--2471Chr03:18490291..18490315 (25 bp)
AACAGAGGTCTGGTACAGTCAGGAT
LOC_Os03g32410
OsAffx.13158.1.S1_at--86--231NONE
ATATTGTTCCTATTCATATGTGATA
NONE
OsAffx.13158.1.S1_at--180--31Chr03:18491102..18491126 (25 bp)
ATTGGCACCTATAGCCATACCTGGG
LOC_Os03g32410
OsAffx.13158.1.S1_at--64--10171Chr03:18491111..18491135 (25 bp)
TATAGCCATACCTGGGCCATATCAC
LOC_Os03g32410
OsAffx.13158.1.S1_at--943--4431NONE
GCCATATCACAAGGTGTTGCCTAAG
NONE
OsAffx.13158.1.S1_at--947--8671Chr03:18491452..18491476 (25 bp)
TGTTGCCTAAGGTCATGGGAGTAAA
LOC_Os03g32410
OsAffx.13158.1.S1_at--529--831Chr03:18491484..18491508 (25 bp)
ATGGATCGAGACTATGCTTGGGAGA
LOC_Os03g32410
OsAffx.13158.1.S1_at--204--10751Chr03:18491511..18491535 (25 bp)
TTGAAGTCCACATGGTCAAGGATAT
LOC_Os03g32410
OsAffx.13158.1.S1_at--239--251Chr03:18491532..18491556 (25 bp)
ATATCACGTGAGATGCTAAGGCCGA
LOC_Os03g32410
OsAffx.13158.1.S1_at--708--5231NONE
GAATAATGCACGTGGAGCACTGATC
NONE
OsAffx.13158.1.S1_at--1118--7511Chr03:18492170..18492190 (21 bp)
GTGGAGCACTGATCAGGACCGCAGC
LOC_Os03g32410
Target Sequence 
AACAGAGGTCTGGTACAGTCAGGATACCATATTGTTCCTATTCATATGTGATATTATTTTGTGCTGATTTATATGAAAAA
TTGGCACCTATAGCCATACCTGGGCCATATCACAAGGTGTTGCCTAAGGTCATGGGAGTAAAGCTAGTGATGGATCGAGA
CTATGCTTGGGAGAAGTTGAAGTCCACATGGTCAAGGATATCACGTGAGATGCTAAGGCCGAAGAATAATGCACGTGGAG
CACTGATCAGGACCGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis