Browse Element(s) Details


OsAffx.13157.1.S1_at

Description tigr:9631.m03169
TID=OsAffx.13157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3239011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32350Os.27691.1.S1_x_at2/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32350Os.27691.2.S1_x_at1/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32360Os.27691.1.S1_x_at2/113+18467074..18468484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32370OsAffx.31869.4.S1_x_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.4.S1_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_x_at6/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_s_at4/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.5.S1_x_at2/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32380Os.46610.1.A1_x_at4/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32380OsAffx.29073.1.S1_x_at3/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32390OsAffx.13157.1.S1_at11/113+18482987..18484302hypothetical protein
LOC_Os03g32400Os.57162.1.S1_x_at11/113+18485450..18486362expressed protein
LOC_Os03g32400Os.57162.1.S1_at11/113+18485450..18486362expressed protein
LOC_Os03g32410OsAffx.13158.1.S1_at8/113+18490260..18492227hypothetical protein
LOC_Os03g32420Os.55531.1.S1_at10/113+18493855..18494861expressed protein
LOC_Os03g32430OsAffx.3389.1.S1_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32430OsAffx.3389.1.S1_x_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32440NANA3+18504330..18507343expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13157.1.S1_at--1129--3351Chr03:18483964..18483988 (25 bp)
CACCTCTCTTCGTCAGGGCCGAAAA
LOC_Os03g32390
OsAffx.13157.1.S1_at--278--9351Chr03:18483976..18484000 (25 bp)
TCAGGGCCGAAAACCACGAACAACA
LOC_Os03g32390
OsAffx.13157.1.S1_at--1022--5491Chr03:18483984..18484008 (25 bp)
GAAAACCACGAACAACAACGACGCT
LOC_Os03g32390
OsAffx.13157.1.S1_at--397--5511Chr03:18483993..18484017 (25 bp)
GAACAACAACGACGCTAAGCAGAGT
LOC_Os03g32390
OsAffx.13157.1.S1_at--842--3251Chr03:18483999..18484023 (25 bp)
CAACGACGCTAAGCAGAGTGGCGGC
LOC_Os03g32390
OsAffx.13157.1.S1_at--626--8111Chr03:18484083..18484107 (25 bp)
GGACGACGCGCCATCGAGCTATGAA
LOC_Os03g32390
OsAffx.13157.1.S1_at--219--5811Chr03:18484087..18484111 (25 bp)
GACGCGCCATCGAGCTATGAATCTC
LOC_Os03g32390
OsAffx.13157.1.S1_at--653--4071Chr03:18484097..18484121 (25 bp)
CGAGCTATGAATCTCGGGAGGCTCC
LOC_Os03g32390
OsAffx.13157.1.S1_at--210--10591Chr03:18484225..18484249 (25 bp)
TTCTCCTTCCCCAATGACGACAGTG
LOC_Os03g32390
OsAffx.13157.1.S1_at--344--5791Chr03:18484240..18484264 (25 bp)
GACGACAGTGCAGGTAACAACTCGG
LOC_Os03g32390
OsAffx.13157.1.S1_at--994--7331Chr03:18484247..18484271 (25 bp)
GTGCAGGTAACAACTCGGCAGCAAA
LOC_Os03g32390
Target Sequence 
CACCTCTCTTCGTCAGGGCCGAAAACCACGAACAACAACGACGCTAAGCAGAGTGGCGGCGACGCGACGTCGGGCGGGGC
TCCATGCCTCCAACTCTCCTTATCGGGGTCGGAAGCCACGGACGACGCGCCATCGAGCTATGAATCTCGGGAGGCTCCTC
TCCCTCTCGGTCGCCTCCCTCGTCGGCTCCGGATCGACCTCGAGCTCCCCTCCCTCTCCGTCGCCTCCCTCCCTCCTCCT
ATCTTCCTCACTGCCGATGCCTTCTCCTTCCCCAATGACGACAGTGCAGGTAACAACTCGGCAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis