Browse Element(s) Details


Os.11188.1.S1_at

Description gb:AK065214.1
DB_XREF= gi:32975232
TID=Os.11188.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G04, full insert sequence.
FL= gb:AK065214.1 gb:AK062014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3388010/11Cystatin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33840Os.7505.2.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840Os.7505.1.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840OsAffx.3991.1.S1_at1/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33850Os.16982.1.S1_at11/115+19885722..19890373UBA/TS-N domain containing protein, expressed
LOC_Os05g33860NANA5+19894208..19895259hypothetical protein
LOC_Os05g33870OsAffx.4510.1.S1_at11/115+19898356..19899306Ran GTPase activating protein, putative
LOC_Os05g33880Os.11188.1.S1_at10/115+19900616..19904541Cystatin domain containing protein, expressed
LOC_Os05g33890Os.32863.1.S1_at11/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33890Os.25587.2.S1_at3/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33900OsAffx.4511.1.S1_s_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33900OsAffx.4511.1.S1_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33910OsAffx.19817.1.S1_x_at10/115+19919542..19920089MATE efflux family protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004869molecular_functioncysteine protease inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11188.1.S1_at--32--10491Chr05:19903121..19903145 (25 bp)
TTAAGGCAGTCGTCGAGTTCCGTCA
LOC_Os05g33880
Os.11188.1.S1_at--576--2811Chr05:19903586..19903609 (24 bp)
AAGATACTGCTGATCCCACTGTGGC
LOC_Os05g33880
Os.11188.1.S1_at--986--8171Chr05:19903615..19903639 (25 bp)
GGAACGACCTGCACAACACTGAGAA
LOC_Os05g33880
Os.11188.1.S1_at--1001--9831Chr05:19903643..19903667 (25 bp)
TAAAGTCTCTGTTGTCCTGTCAACC
LOC_Os05g33880
Os.11188.1.S1_at--305--4311NONE
CCTTTTCTCAGACATACTCGGTGTG
NONE
Os.11188.1.S1_at--216--2011Chr05:19904206..19904230 (25 bp)
ACTCGGTGTGAATCTAGCTCCATGG
LOC_Os05g33880
Os.11188.1.S1_at--304--1191Chr05:19904288..19904312 (25 bp)
AGTAGCTGTTATCCTTTTGTGAAGT
LOC_Os05g33880
Os.11188.1.S1_at--276--10251Chr05:19904303..19904327 (25 bp)
TTTGTGAAGTTTTCCCCACTGTTAT
LOC_Os05g33880
Os.11188.1.S1_at--123--7371Chr05:19904412..19904436 (25 bp)
GTGAACACTCCCATGTATATTCCAT
LOC_Os05g33880
Os.11188.1.S1_at--389--311Chr05:19904435..19904459 (25 bp)
ATACCTTTCGTTCCCATGCATGTAT
LOC_Os05g33880
Os.11188.1.S1_at--246--1791Chr05:19904476..19904500 (25 bp)
ACCGTTGTATGGTATACCCGCTGCA
LOC_Os05g33880
Target Sequence 
TTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAA
GATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAAC
CTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCA
GTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGATGTCTAGATCGTAATAT
GCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATAT
TCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACTGNCTACCGTTGTATGGTATACCCGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis