Browse Element(s) Details


Os.11195.1.S1_at

Description gb:CR292552
DB_XREF= gi:44679118
DB_XREF=CR292552
CLONE=y728a03p3
TID=Os.11195.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11195 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_190397.1 (A.thaliana) B12D-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1733011/11senescence-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17280Os.49134.2.S1_x_at8/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17280Os.49134.2.S1_at6/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17290Os.34131.1.S1_s_at9/117+10209817..10211952hAT family dimerisation domain containing protein
LOC_Os07g17300OsAffx.28489.1.S1_at11/117+10216583..10219038hypothetical protein
LOC_Os07g17310Os.53898.1.S1_at11/117+10221827..10224447senescence-associated protein, putative, expressed
LOC_Os07g17320OsAffx.16308.1.S1_at11/117+10228390..10229262hypothetical protein
LOC_Os07g17320Os.55138.1.S1_x_at3/117+10228390..10229262hypothetical protein
LOC_Os07g17330Os.11195.1.S1_at11/117+10230137..10230977senescence-associated protein, putative, expressed
LOC_Os07g17340Os.47463.1.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17340Os.14491.2.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17350NANA7+10241353..10243527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17360Os.11000.2.S1_x_at11/117+10246058..10250747transposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010150biological_processleaf senescence
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11195.1.S1_at--1030--3791Chr07:10230252..10230276 (25 bp)
CTCCGCCGCCTGGAAGAGGTGGATC
LOC_Os07g17330
Os.11195.1.S1_at--1017--7611Chr07:10230703..10230727 (25 bp)
GGGAAGCGCTACTCGCAGCACGGCT
LOC_Os07g17330
Os.11195.1.S1_at--988--3791Chr07:10230714..10230738 (25 bp)
CTCGCAGCACGGCTTCAGGAAGTTC
LOC_Os07g17330
Os.11195.1.S1_at--727--5811Chr07:10230790..10230814 (25 bp)
GACCCGCCCAAGTACTAAGACCGTG
LOC_Os07g17330
Os.11195.1.S1_at--545--2011Chr07:10230803..10230827 (25 bp)
ACTAAGACCGTGTTGTTGGCTGGTG
LOC_Os07g17330
Os.11195.1.S1_at--1007--7651Chr07:10230827..10230851 (25 bp)
GGGATTGATTGCCATATGCCACCGT
LOC_Os07g17330
Os.11195.1.S1_at--6--251Chr07:10230840..10230864 (25 bp)
ATATGCCACCGTTTTGCCGGAATTT
LOC_Os07g17330
Os.11195.1.S1_at--374--4131Chr07:10230848..10230872 (25 bp)
CCGTTTTGCCGGAATTTCAATTCAT
LOC_Os07g17330
Os.11195.1.S1_at--821--9731Chr07:10230864..10230888 (25 bp)
TCAATTCATATGCATGTTTCAACAT
LOC_Os07g17330
Os.11195.1.S1_at--769--2171Chr07:10230914..10230938 (25 bp)
ACAAATATTGGTCTCTGATCTGAAT
LOC_Os07g17330
Os.11195.1.S1_at--389--231Chr07:10230940..10230964 (25 bp)
ATATTCATCAGACAAATGCGTATGC
LOC_Os07g17330
Target Sequence 
CTCCGCCGCCTGGAAGAGGTGGATCCGCCCCGAGGTGTACCCGCTCTTCCTCGCCACCGGCGTCGCCGTCTCCATCTGCG
TCGGCCAGCTCGTCCGCAACATCACCGGCAACCCCGAAGTCAGGGTGTTGAAGGAGAAGAGGGCGGCCGGTGTGCTGGAG
AACTTCGACGAGGGGAAGCGCTACTCGCAGCACGGCTTCAGGAAGTTCATCGACGGGAAGCGCCCCGAGATCATGCCCGG
CATCAACAGCTTCTTCTCCGACCCGCCCAAGTACTAAGACCGTGTTGTTGGCTGGTGGGATTGATTGCCATATGCCACCG
TTTTGCCGGAATTTCAATTCATATGCATGTTTCAACATGTTCGAATATTTGATTTGAGCGTATACAAATATTGGTCTCTG
ATCTGAATAATATTCATCAGACAAATGCGTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis