Browse Element(s) Details


Os.11215.1.S1_a_at

Description gb:AK073179.1
DB_XREF= gi:32983202
TID=Os.11215.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033085H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033004F21, full insert sequence.
FL= gb:AK073179.1 gb:AK061641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4901010/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48990Os.53518.1.S1_at11/116+29678420..29681810NB-ARC domain containing protein, expressed
LOC_Os06g49000Os.49707.2.S1_x_at11/116+29695562..29702209expressed protein
LOC_Os06g49000Os.49707.1.S1_at11/116+29695562..29702209expressed protein
LOC_Os06g49010Os.11215.1.S1_a_at10/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49010OsAffx.2442.1.S1_x_at1/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49020Os.49860.1.S1_at11/116+29710344..2971161726S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os06g49030Os.11089.1.S1_at11/116+29712471..29715990expressed protein
LOC_Os06g49040Os.5279.1.S1_at11/116+29722468..29726091myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050Os.53611.1.S1_at11/116+29726337..29730922hAT dimerisation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11215.1.S1_a_at--775--6251Chr06:29704380..29704404 (25 bp)
GATGGGCTCATACCATTCAAGGGAA
LOC_Os06g49010
Os.11215.1.S1_a_at--526--5311NONE
GAAGGTCCTCAACCAAGGTGTGGAT
NONE
Os.11215.1.S1_a_at--798--1051Chr06:29703154..29703178 (25 bp)
AGGTGTGGATCCAGCCTGTGCCGTC
LOC_Os06g49010
Os.11215.1.S1_a_at--954--2951Chr06:29703114..29703138 (25 bp)
AATGGAGCCCCGGATCTTCGGCGTG
LOC_Os06g49010
Os.11215.1.S1_a_at--133--911Chr06:29702864..29702888 (25 bp)
AGGCGTTCATGCATCCTGGCAATGG
LOC_Os06g49010
Os.11215.1.S1_a_at--566--4851Chr06:29702828..29702852 (25 bp)
GCTATGGCCATCTGCACTGATTCTG
LOC_Os06g49010
Os.11215.1.S1_a_at--640--3871Chr06:29702812..29702836 (25 bp)
CTGATTCTGCTGCATCTATTTGGAA
LOC_Os06g49010
Os.11215.1.S1_a_at--746--3891Chr06:29702776..29702800 (25 bp)
CTGGTTACTCCGTTCATGATCTTAC
LOC_Os06g49010
Os.11215.1.S1_a_at--1107--6411Chr06:29702759..29702783 (25 bp)
GATCTTACCCTGTCAGTGATGGACT
LOC_Os06g49010
Os.11215.1.S1_a_at--581--5151Chr06:29702707..29702731 (25 bp)
GCAACCCCAGGATTTATTATTTCTA
LOC_Os06g49010
Os.11215.1.S1_a_at--477--2231Chr06:29702671..29702695 (25 bp)
AAACCACCAGGATATTTGCCATTGG
LOC_Os06g49010
Target Sequence 
GATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTC
CAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGG
CCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCT
GTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGA
TCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCT
GCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGG
GGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11215.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis