Browse Element(s) Details


Os.11241.1.S1_at

Description gb:AK067875.1
DB_XREF= gi:32977893
TID=Os.11241.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121C10, full insert sequence.
FL= gb:AK067875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g032309/11MatE family protein, expressed
LOC_Os11g034848/11MatE family protein, expressed
LOC_Os11g032406/11MATE efflux family protein, expressed
LOC_Os11g035001/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03170NANA12+1210889..1211347hypothetical protein
LOC_Os12g03180Os.28138.1.S1_at9/1112+1211877..1215296protein kinase, putative, expressed
LOC_Os12g03190Os.9497.1.S1_at10/1112+1215713..1219583homoserine dehydrogenase family protein, expressed
LOC_Os12g03200NANA12+1219955..1224034MatE family protein, expressed
LOC_Os12g03210NANA12+1225729..1228934transposon protein, putative, Mariner sub-class
LOC_Os12g03220OsAffx.31561.1.S1_at10/1112+1230128..1231993hypothetical protein
LOC_Os12g03230Os.11241.1.S1_at9/1112+1234637..1236472MatE family protein, expressed
LOC_Os12g03240OsAffx.7468.1.S1_at11/1112+1237813..1238252hypothetical protein
LOC_Os12g03250Os.46500.2.S1_at1/1112+1241368..1245665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03250Os.46500.1.S1_at1/1112+1241368..1245665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03260Os.52496.1.S1_at11/1112+1250285..1255039MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11241.1.S1_at--1032--3733Chr11:1188064..1188085 (22 bp)
CTCAGGTGTCGCTATCGGATCGGGT
LOC_Os11g03240
Os.11241.1.S1_at--384--3693Chr11:1188072..1188096 (25 bp)
CTATCGGATCGGGTTGGCAAAGTGT
LOC_Os11g03240
Os.11241.1.S1_at--1143--3712Chr11:1188124..1188148 (25 bp)
CTACTTGATTGGTATCCCTCTTGGT
LOC_Os11g03240
Os.11241.1.S1_at--376--8593Chr11:1188133..1188157 (25 bp)
TGGTATCCCTCTTGGTGCAATACTA
LOC_Os11g03240
Os.11241.1.S1_at--269--6413Chr11:1188276..1188300 (25 bp)
GATCGGCATGCTTCTTGGAACACTA
LOC_Os11g03240
Os.11241.1.S1_at--839--2613Chr11:1188643..1188667 (25 bp)
AACCTGTCAAAATGGGATTGTGCTC
LOC_Os11g03240
Os.11241.1.S1_at--925--6593Chr11:1188658..1188682 (25 bp)
GATTGTGCTCGGATTTAAGATTTTC
NONE
Os.11241.1.S1_at--429--373Chr11:1188709..1188733 (25 bp)
ATCAAGGTCACGTATCCACCAAAGA
NONE
Os.11241.1.S1_at--994--7971Chr12:1234703..1234727 (25 bp)
GGATGATGGCTTTTCCGCCGGGAAA
LOC_Os12g03230
Os.11241.1.S1_at--1018--6872Chr12:1234671..1234695 (25 bp)
GTATATATACCCCTTATCCTATTAT
LOC_Os12g03230
Os.11241.1.S1_at--916--2651NONE
AAGCCCCTGCCACAATGTGAGCCTT
NONE
Target Sequence 
CTCAGGTGTCGCTATCGGATCGGGTTGGCAAAGTGTAGTTGCCTATGTTAATGTTACATCGTACTACTTGATTGGTATCC
CTCTTGGTGCAATACTAGGCTATGTGCTAGGATTTCAAGCAAAGGGNATTTGGATCGGCATGCTTCTTGGAACACTAGTC
CAGACTCTTGTGCTTCTATTCATCACACTTAGGACCNATTGGAAAAAACAGGTAGAGATTACTCGAGAGAGATTAAACAG
ATGGTATATGGATGAGAACGGNCGATCACAGAATTCAATAGGAAATGCATGATNTAAAACTTCTGCACACTTGTAAAGAA
TTTTGATGATTTATGAATCAACCTGTCAAAATGGGATTGTGCTCGGATTTAAGATTTTCAAGGTTTGAACTTTCAAAAAA
NNNNCATCAAGGTCACGTATCCACCAAAGAACAATNTTAATCATATGGCTTGGGATGATGGCTTTTCCGCCGGGAAAAGT
TATGGTATATATACCCCTTATCCTATTATTNCACCAAGCCCCTGCCACAATGTGAGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis